Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   J7U05_RS08555 Genome accession   NZ_CP072443
Coordinates   1653858..1654814 (-) Length   318 a.a.
NCBI ID   WP_011226622.1    Uniprot ID   A0A8D6XRE9
Organism   Streptococcus thermophilus strain S24724     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1648858..1659814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7U05_RS08530 (J7U05_08495) - 1650210..1650872 (-) 663 WP_023909970.1 CPBP family intramembrane glutamic endopeptidase -
  J7U05_RS08535 (J7U05_08500) - 1650969..1651421 (-) 453 WP_116920365.1 CAAX protease -
  J7U05_RS08540 - 1651495..1651833 (-) 339 WP_372432830.1 lysostaphin resistance A-like protein -
  J7U05_RS08545 (J7U05_08510) - 1652163..1652360 (-) 198 WP_002885716.1 helix-turn-helix transcriptional regulator -
  J7U05_RS08550 (J7U05_08515) - 1652609..1653802 (-) 1194 WP_014608740.1 acetate kinase -
  J7U05_RS08555 (J7U05_08520) comYH 1653858..1654814 (-) 957 WP_011226622.1 class I SAM-dependent methyltransferase Machinery gene
  J7U05_RS08560 (J7U05_08525) comGG 1654859..1655176 (-) 318 WP_002952035.1 competence type IV pilus minor pilin ComGG -
  J7U05_RS08565 (J7U05_08530) comYF 1655154..1655591 (-) 438 WP_014608742.1 competence type IV pilus minor pilin ComGF Machinery gene
  J7U05_RS08570 (J7U05_08535) comGE 1655575..1655868 (-) 294 WP_011226625.1 competence type IV pilus minor pilin ComGE -
  J7U05_RS08575 (J7U05_08540) comYD 1655840..1656268 (-) 429 WP_011226626.1 competence type IV pilus minor pilin ComGD Machinery gene
  J7U05_RS08580 (J7U05_08545) comYC 1656228..1656554 (-) 327 WP_014727724.1 competence type IV pilus major pilin ComGC Machinery gene
  J7U05_RS08585 (J7U05_08550) comYB 1656551..1657651 (-) 1101 WP_116920398.1 competence type IV pilus assembly protein ComGB Machinery gene
  J7U05_RS08590 (J7U05_08555) comGA/cglA/cilD 1657533..1658474 (-) 942 WP_014727726.1 competence type IV pilus ATPase ComGA Machinery gene
  J7U05_RS08595 (J7U05_08560) - 1658555..1658917 (-) 363 WP_014608746.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 35857.00 Da        Isoelectric Point: 4.7123

>NTDB_id=553417 J7U05_RS08555 WP_011226622.1 1653858..1654814(-) (comYH) [Streptococcus thermophilus strain S24724]
MNFEAIETAFELLLENVQTIENDLGTHAYDALIEQNSYYLGAEVANELIIKNNEKLRALNLSKEEWRRAFQFLFIKLGQL
EALQANHQFTPDAIGFIILYLLEGLTQEKQLDILEIGSGTGNLAETLLNNSQKTLNYMGMEVDDLLIDLSASIAEVVNSV
AVYIQGDAVRPHILKESNVIISDLPIGYYPNDEIASRFKVAATGEHTYAHHLLMEQSLKYLKKDGIAIFLAPTNLLTSPQ
SDLLKKWLSGYADIIAVITLPEAAFGNKHNMKSIFVLKKQTKNAPETFVYPLSDLQNPRILKDFTENFQKWKSDNSIF

Nucleotide


Download         Length: 957 bp        

>NTDB_id=553417 J7U05_RS08555 WP_011226622.1 1653858..1654814(-) (comYH) [Streptococcus thermophilus strain S24724]
ATGAATTTTGAAGCAATTGAGACAGCTTTTGAGCTGTTGTTAGAAAATGTCCAAACTATTGAAAATGATCTTGGAACCCA
TGCTTACGATGCACTTATTGAGCAAAATTCCTATTATTTGGGGGCTGAGGTTGCTAATGAGCTCATCATCAAAAACAACG
AGAAATTACGGGCGCTTAATCTAAGTAAAGAGGAGTGGCGTCGTGCTTTTCAGTTTTTGTTTATCAAACTAGGGCAATTG
GAAGCTTTACAAGCCAATCACCAATTTACACCAGATGCTATCGGATTTATCATTCTGTACTTGCTCGAAGGTTTGACCCA
GGAAAAACAATTAGATATCTTGGAGATTGGTTCGGGAACAGGAAACTTGGCTGAAACTCTTCTAAATAATAGTCAGAAAA
CCCTTAATTATATGGGGATGGAAGTTGATGATCTTCTTATCGATTTGTCAGCTAGTATTGCTGAGGTGGTGAATTCAGTA
GCGGTTTATATCCAAGGGGATGCTGTTCGACCACATATTCTCAAAGAGAGCAACGTTATTATCAGCGATTTACCTATAGG
TTACTACCCTAATGATGAGATTGCGAGTCGTTTCAAGGTGGCAGCAACTGGCGAACACACTTATGCCCATCATCTTCTTA
TGGAGCAATCGCTTAAGTATTTGAAGAAAGATGGTATTGCTATTTTTTTGGCACCAACCAATCTTTTGACAAGCCCTCAA
AGTGATCTGCTTAAGAAGTGGTTATCAGGATATGCTGATATTATTGCTGTTATTACTCTTCCAGAAGCAGCTTTTGGCAA
TAAACATAACATGAAGTCTATCTTTGTGCTAAAAAAACAAACTAAAAATGCTCCTGAGACCTTCGTTTACCCACTTAGCG
ATTTGCAAAATCCAAGGATCCTCAAGGATTTTACAGAGAATTTCCAAAAATGGAAATCAGATAATTCCATTTTCTAG

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(69-291)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

68.889

99.057

0.682
  comYH Streptococcus mutans UA140

68.889

99.057

0.682