Detailed information NTG0553419

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: J7U05_RS08575
• Genome accession: NZ_CP072443
• Coordinates: 1655840..1656268 (-)
• Length: 142 a.a.
• NCBI ID: WP_011226626.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain S24724
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1650840..1661268

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J7U05_RS08535 (J7U05_08500)	-	1650969..1651421 (-)	453	WP_116920365.1	CAAX protease	-
J7U05_RS08540	-	1651495..1651833 (-)	339	WP_372432830.1	lysostaphin resistance A-like protein	-
J7U05_RS08545 (J7U05_08510)	-	1652163..1652360 (-)	198	WP_002885716.1	helix-turn-helix transcriptional regulator	-
J7U05_RS08550 (J7U05_08515)	-	1652609..1653802 (-)	1194	WP_014608740.1	acetate kinase	-
J7U05_RS08555 (J7U05_08520)	comYH	1653858..1654814 (-)	957	WP_011226622.1	class I SAM-dependent methyltransferase	Machinery gene
J7U05_RS08560 (J7U05_08525)	comGG	1654859..1655176 (-)	318	WP_002952035.1	competence type IV pilus minor pilin ComGG	-
J7U05_RS08565 (J7U05_08530)	comYF	1655154..1655591 (-)	438	WP_014608742.1	competence type IV pilus minor pilin ComGF	Machinery gene
J7U05_RS08570 (J7U05_08535)	comGE	1655575..1655868 (-)	294	WP_011226625.1	competence type IV pilus minor pilin ComGE	-
J7U05_RS08575 (J7U05_08540)	comYD	1655840..1656268 (-)	429	WP_011226626.1	competence type IV pilus minor pilin ComGD	Machinery gene
J7U05_RS08580 (J7U05_08545)	comYC	1656228..1656554 (-)	327	WP_014727724.1	competence type IV pilus major pilin ComGC	Machinery gene
J7U05_RS08585 (J7U05_08550)	comYB	1656551..1657651 (-)	1101	WP_116920398.1	competence type IV pilus assembly protein ComGB	Machinery gene
J7U05_RS08590 (J7U05_08555)	comGA/cglA/cilD	1657533..1658474 (-)	942	WP_014727726.1	competence type IV pilus ATPase ComGA	Machinery gene
J7U05_RS08595 (J7U05_08560)	-	1658555..1658917 (-)	363	WP_014608746.1	DUF1033 family protein	-

Sequence

Protein

• Length: 142 a.a.
• Molecular weight: 15859.45 Da
• Isoelectric Point: 10.3330

>NTDB_id=553419 J7U05_RS08575 WP_011226626.1 1655840..1656268(-) (comYD) [Streptococcus thermophilus strain S24724]
MRNMVVKAAQWPIRAFTLLESLMTLAVVVFLTLSLSGSVTGIFQQVEINLFYLRFEYLYRDSQRLASAEGSNVELQLTKD
KVSNGRSSLLIPKSIHLDKGQTLVFDAKGGNSSLTKIRFSSDKEVVTYLLNMGSGKYKKTIS

Nucleotide

• Length: 429 bp

>NTDB_id=553419 J7U05_RS08575 WP_011226626.1 1655840..1656268(-) (comYD) [Streptococcus thermophilus strain S24724]
ATGCGAAACATGGTGGTGAAAGCCGCTCAGTGGCCAATTAGAGCTTTCACCTTGTTGGAGAGCCTGATGACACTAGCAGT
GGTTGTCTTTCTCACTCTGAGTTTGTCAGGCTCAGTCACAGGTATTTTTCAGCAGGTCGAGATTAATCTTTTTTATCTGC
GTTTTGAGTACCTATATCGAGATAGTCAGCGCTTGGCATCAGCGGAAGGATCTAATGTTGAATTGCAGTTAACTAAGGAT
AAGGTCAGTAATGGAAGGTCTAGTCTGCTTATTCCTAAAAGTATTCATCTGGATAAGGGGCAGACGCTAGTGTTTGATGC
TAAAGGAGGCAACTCTAGCCTCACGAAAATTCGTTTTTCAAGTGATAAGGAGGTGGTGACCTATCTGCTTAACATGGGCA
GTGGTAAATATAAAAAGACGATCTCTTAG

Domains

No domain identified.

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	52.672	92.254	0.486
comYD	Streptococcus mutans UA159	52.672	92.254	0.486
comYD	Streptococcus gordonii str. Challis substr. CH1	41.429	98.592	0.408
comGD/cglD	Streptococcus pneumoniae Rx1	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae D39	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae R6	44.094	89.437	0.394
comGD/cglD	Streptococcus mitis NCTC 12261	44.094	89.437	0.394
comGD/cglD	Streptococcus pneumoniae TIGR4	44.094	89.437	0.394
comGD/cglD	Streptococcus mitis SK321	43.307	89.437	0.387
comGD	Lactococcus lactis subsp. cremoris KW2	40.909	92.958	0.38