Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   LXE94_RS08255 Genome accession   NZ_CP090125
Coordinates   1570542..1571567 (+) Length   341 a.a.
NCBI ID   WP_014476730.1    Uniprot ID   -
Organism   Bacillus subtilis strain Bs96     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1565542..1576567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXE94_RS08220 (LXE94_08200) ylbE 1565842..1566081 (+) 240 WP_003232231.1 YlbE-like family protein -
  LXE94_RS08225 (LXE94_08205) ylbF 1566197..1566646 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  LXE94_RS08230 (LXE94_08210) ylbG 1566701..1566973 (+) 273 WP_069964462.1 YlbG family protein -
  LXE94_RS08235 (LXE94_08215) rsmD 1567296..1567850 (+) 555 WP_210216431.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  LXE94_RS08240 (LXE94_08220) coaD 1567855..1568340 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  LXE94_RS08245 (LXE94_08225) spoVV 1568351..1569577 (-) 1227 WP_017694817.1 dipicolinic acid transporter SpoVV -
  LXE94_RS08250 (LXE94_08230) ylbK 1569758..1570540 (+) 783 WP_017694818.1 patatin family protein -
  LXE94_RS08255 (LXE94_08235) sepM 1570542..1571567 (+) 1026 WP_014476730.1 protease DdcP Regulator
  LXE94_RS08260 (LXE94_08240) tmcAL 1571584..1572831 (-) 1248 WP_003244707.1 nucleotidyltransferase -
  LXE94_RS08265 (LXE94_08245) - 1572828..1573013 (-) 186 WP_003232215.1 hypothetical protein -
  LXE94_RS08270 (LXE94_08250) ylbN 1573041..1573559 (+) 519 WP_014479718.1 DUF177 domain-containing protein -
  LXE94_RS08275 (LXE94_08255) rpmF 1573581..1573760 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  LXE94_RS08280 (LXE94_08260) gerR 1573906..1574487 (+) 582 WP_015383592.1 sporulation specific transcriptional regulator GerR -
  LXE94_RS08285 (LXE94_08265) ylbP 1574544..1575026 (-) 483 WP_014476736.1 N-acetyltransferase -
  LXE94_RS08290 (LXE94_08270) panEA 1575186..1576082 (+) 897 WP_017694819.1 2-dehydropantoate 2-reductase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37652.22 Da        Isoelectric Point: 5.9932

>NTDB_id=553142 LXE94_RS08255 WP_014476730.1 1570542..1571567(+) (sepM) [Bacillus subtilis strain Bs96]
MLRKKHFSWMLVILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSDMKI
VPVDTMQDAIDYLNKLKAKST

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=553142 LXE94_RS08255 WP_014476730.1 1570542..1571567(+) (sepM) [Bacillus subtilis strain Bs96]
TTGCTACGTAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGCC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCGTTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAGGAAGGCGAGTCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGTTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CAGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATCGAAAATATTGGCGGCCCGTCAGCAGGGTTAATGATGTCC
CTTGAAATCTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACCATTGATGTTGA
CGGAAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCAGTAAAAACAGCAAAAGATATTGATTCAGATATGAAGATT
GTGCCTGTTGATACCATGCAGGATGCAATTGATTATTTGAATAAGCTGAAAGCGAAAAGCACCTGA

Domains

Predicted by InterProScan.

Peptidase family M50 (Peptidase_M50)

(59-220)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)

PDZ domain (PDZ_2)

(128-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

39.143

100

0.402