Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   LXE94_RS08225 Genome accession   NZ_CP090125
Coordinates   1566197..1566646 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain Bs96     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1561197..1571646
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXE94_RS08185 (LXE94_08165) ctaE 1561213..1561836 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  LXE94_RS08190 (LXE94_08170) ctaF 1561839..1562171 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  LXE94_RS08195 (LXE94_08175) ctaG 1562199..1563092 (+) 894 WP_003244967.1 cytochrome c oxidase assembly factor CtaG -
  LXE94_RS08200 (LXE94_08180) ylbA 1563124..1563486 (-) 363 WP_003232238.1 YugN family protein -
  LXE94_RS08205 (LXE94_08185) ylbB 1563626..1564072 (+) 447 WP_029726520.1 CBS domain-containing protein -
  LXE94_RS08210 (LXE94_08190) ylbC 1564156..1565196 (+) 1041 WP_014479713.1 CAP domain-containing protein -
  LXE94_RS08215 (LXE94_08195) ylbD 1565428..1565826 (+) 399 WP_003232233.1 YlbD family protein -
  LXE94_RS08220 (LXE94_08200) ylbE 1565842..1566081 (+) 240 WP_003232231.1 YlbE-like family protein -
  LXE94_RS08225 (LXE94_08205) ylbF 1566197..1566646 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  LXE94_RS08230 (LXE94_08210) ylbG 1566701..1566973 (+) 273 WP_069964462.1 YlbG family protein -
  LXE94_RS08235 (LXE94_08215) rsmD 1567296..1567850 (+) 555 WP_210216431.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  LXE94_RS08240 (LXE94_08220) coaD 1567855..1568340 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  LXE94_RS08245 (LXE94_08225) spoVV 1568351..1569577 (-) 1227 WP_017694817.1 dipicolinic acid transporter SpoVV -
  LXE94_RS08250 (LXE94_08230) ylbK 1569758..1570540 (+) 783 WP_017694818.1 patatin family protein -
  LXE94_RS08255 (LXE94_08235) sepM 1570542..1571567 (+) 1026 WP_014476730.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=553141 LXE94_RS08225 WP_003221370.1 1566197..1566646(+) (ylbF) [Bacillus subtilis strain Bs96]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=553141 LXE94_RS08225 WP_003221370.1 1566197..1566646(+) (ylbF) [Bacillus subtilis strain Bs96]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTCGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1