Detailed information NTG0553025

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: LV497_RS04890
• Genome accession: NZ_CP090007
• Coordinates: 1107125..1108225 (+)
• Length: 366 a.a.
• NCBI ID: WP_084869610.1
• Uniprot ID: -
• Organism: Streptococcus salivarius strain SALI-10
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1102125..1113225

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LV497_RS04865 (LV497_04865)	pgsA	1102667..1103209 (-)	543	WP_002885640.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
LV497_RS04870 (LV497_04870)	-	1103222..1104079 (-)	858	WP_245084127.1	helix-turn-helix transcriptional regulator	-
LV497_RS04875 (LV497_04875)	-	1104138..1105415 (-)	1278	WP_245084130.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
LV497_RS04880 (LV497_04880)	-	1105417..1106667 (-)	1251	WP_245084133.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
LV497_RS04885 (LV497_04885)	yaaA	1106745..1107122 (+)	378	WP_084869612.1	S4 domain-containing protein YaaA	-
LV497_RS04890 (LV497_04890)	recF	1107125..1108225 (+)	1101	WP_084869610.1	DNA replication/repair protein RecF	Machinery gene
LV497_RS04895 (LV497_04895)	guaB	1108405..1109886 (-)	1482	WP_013991341.1	IMP dehydrogenase	-
LV497_RS04900 (LV497_04900)	trpS	1110065..1111087 (-)	1023	WP_002883969.1	tryptophan--tRNA ligase	-
LV497_RS04905 (LV497_04905)	-	1111516..1112388 (+)	873	WP_002883963.1	YitT family protein	-

Sequence

Protein

• Length: 366 a.a.
• Molecular weight: 42229.25 Da
• Isoelectric Point: 7.7930

>NTDB_id=553025 LV497_RS04890 WP_084869610.1 1107125..1108225(+) (recF) [Streptococcus salivarius strain SALI-10]
MWLEKIDIQHFRNYTEASVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTRSDKELIQFQQNTLKLNGIVHRHSGK
LPLEISLSNKGRITKVNHLKQAKLSDYIGHMTVVLFAPEDLQLIKGSPSLRRKFIDIDLGQIKPVYLSDLSSYNHVLKQR
NAYLKSTDNVDINFLSVLDEQLSDFGTRVIEHRLEFIKQLEEEADRHHSNLSNQIERLKISYESNIPLENNKVIRESFLT
TLKQNHKRDIFKKNTGVGPHRDDLTFYINDINASFGSQGQQRSLILSLKMAEIALIKKVTGEFPILLLDDVMSELDNHRQ
LKLLESIDEEVQTFMTTTSLDHLSNLPPDLKTFLVKNGDIYEKQVD

Nucleotide

• Length: 1101 bp

>NTDB_id=553025 LV497_RS04890 WP_084869610.1 1107125..1108225(+) (recF) [Streptococcus salivarius strain SALI-10]
ATGTGGCTCGAAAAAATTGATATTCAACACTTTAGAAATTATACTGAAGCCTCTGTGAGCTTCTCACCTCATCTCAATAT
TTTTCTTGGTCGCAATGCCCAAGGAAAAACAAATATTCTTGAGGCCATCTATTTTCTAGCATTGACACGTAGTCATCGGA
CCCGTTCAGATAAAGAACTGATTCAATTTCAACAAAATACTCTCAAACTGAACGGCATCGTGCATCGTCATAGTGGGAAG
CTACCTCTGGAAATCAGTTTATCTAATAAAGGACGCATAACAAAGGTTAACCACCTCAAACAAGCTAAATTATCCGATTA
TATCGGTCACATGACTGTGGTGCTCTTTGCTCCTGAGGATTTACAACTTATAAAAGGATCTCCAAGCCTAAGGCGTAAAT
TTATAGATATTGATTTAGGACAGATTAAGCCTGTTTATCTCTCAGACCTATCAAGTTATAATCATGTACTCAAACAACGT
AATGCCTATCTCAAATCTACTGACAATGTAGACATTAATTTCCTCTCAGTGTTAGATGAACAGCTTTCCGATTTTGGAAC
ACGAGTTATCGAACATAGACTAGAATTTATCAAGCAATTAGAGGAGGAGGCAGATAGACATCATAGTAACCTCTCAAATC
AGATAGAGCGCCTTAAAATCTCCTACGAATCTAATATCCCACTGGAAAATAACAAAGTTATTCGCGAATCATTTTTAACC
ACGTTAAAGCAAAATCACAAAAGAGATATCTTCAAAAAGAACACTGGTGTTGGTCCGCATAGGGATGATTTAACATTTTA
CATTAATGACATAAATGCATCTTTCGGTAGTCAGGGGCAGCAACGTAGTCTCATACTTTCTTTAAAAATGGCTGAGATTG
CTCTGATAAAAAAAGTAACAGGTGAATTTCCTATTCTTCTCCTCGATGATGTCATGAGTGAGCTTGACAATCACCGTCAA
CTTAAACTGTTAGAAAGTATTGACGAAGAGGTTCAAACCTTCATGACGACAACTTCACTTGATCATCTGAGTAACCTACC
ACCTGATTTAAAGACCTTCTTAGTTAAGAATGGTGATATTTATGAAAAACAAGTCGATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-343)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	65.084	97.814	0.637
recF	Bacillus subtilis subsp. subtilis str. 168	43.869	100	0.44