Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGE   Type   Machinery gene
Locus tag   LV497_RS04260 Genome accession   NZ_CP090007
Coordinates   987756..987986 (-) Length   76 a.a.
NCBI ID   WP_002887015.1    Uniprot ID   -
Organism   Streptococcus salivarius strain SALI-10     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 982756..992986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LV497_RS04225 (LV497_04225) - 983146..983592 (-) 447 WP_022496102.1 hypothetical protein -
  LV497_RS04230 (LV497_04230) - 983670..984326 (-) 657 WP_002885876.1 CPBP family intramembrane glutamic endopeptidase -
  LV497_RS04235 (LV497_04235) - 984338..984535 (-) 198 WP_002885716.1 helix-turn-helix transcriptional regulator -
  LV497_RS04240 (LV497_04240) - 984786..985979 (-) 1194 WP_002885831.1 acetate kinase -
  LV497_RS04245 (LV497_04245) comGH 986036..986992 (-) 957 WP_022496101.1 class I SAM-dependent methyltransferase Machinery gene
  LV497_RS04250 (LV497_04250) comGG 987037..987354 (-) 318 WP_021144683.1 competence type IV pilus minor pilin ComGG Machinery gene
  LV497_RS04255 (LV497_04255) comGF 987332..987769 (-) 438 WP_022496100.1 competence type IV pilus minor pilin ComGF Machinery gene
  LV497_RS04260 (LV497_04260) comGE 987756..987986 (-) 231 WP_002887015.1 competence type IV pilus minor pilin ComGE Machinery gene
  LV497_RS04265 (LV497_04265) comGD 988018..988446 (-) 429 WP_014632541.1 competence type IV pilus minor pilin ComGD Machinery gene
  LV497_RS04270 (LV497_04270) comGC 988406..988720 (-) 315 WP_037611125.1 competence type IV pilus major pilin ComGC Machinery gene
  LV497_RS04275 (LV497_04275) comGB 988729..989829 (-) 1101 WP_156024868.1 competence type IV pilus assembly protein ComGB Machinery gene
  LV497_RS04280 (LV497_04280) comGA 989711..990652 (-) 942 WP_022496097.1 competence type IV pilus ATPase ComGA Machinery gene
  LV497_RS04285 (LV497_04285) - 990732..991094 (-) 363 WP_245085384.1 DUF1033 family protein -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8399.78 Da        Isoelectric Point: 10.0924

>NTDB_id=553017 LV497_RS04260 WP_002887015.1 987756..987986(-) (comGE) [Streptococcus salivarius strain SALI-10]
MAVLVLVSGLILDQINTNRRLMARNLHQQEVLSVATMAVQTKQDQLTLNGITVTVKRSQQGIAVYESGKEIIHVSQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=553017 LV497_RS04260 WP_002887015.1 987756..987986(-) (comGE) [Streptococcus salivarius strain SALI-10]
ATGGCTGTCTTAGTACTCGTCAGTGGTCTTATCTTGGATCAGATCAATACCAATCGTAGGCTAATGGCTAGGAATCTCCA
CCAACAGGAGGTCTTGAGTGTGGCAACCATGGCAGTTCAGACAAAACAGGATCAGTTGACCTTAAATGGGATCACAGTGA
CGGTAAAACGTAGCCAGCAAGGTATCGCGGTTTATGAATCAGGAAAGGAGATTATTCATGTCTCTCAATAG

Domains

Predicted by InterProScan.

Type II secretory pathway pseudopilin (ComGE)

(1-74)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Streptococcus mutans UA140

39.189

97.368

0.382
  comGE Streptococcus mutans UA159

39.189

97.368

0.382