Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   J7T60_RS03030 Genome accession   NZ_CP072436
Coordinates   561126..562352 (+) Length   408 a.a.
NCBI ID   WP_372433515.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain S24735     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 556126..567352
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7T60_RS03005 (J7T60_02970) - 556701..557972 (-) 1272 WP_372433514.1 hydroxymethylglutaryl-CoA reductase, degradative -
  J7T60_RS03010 (J7T60_02975) - 557965..559140 (-) 1176 WP_179971245.1 hydroxymethylglutaryl-CoA synthase -
  J7T60_RS03015 (J7T60_02980) - 559462..560322 (+) 861 WP_002950145.1 thymidylate synthase -
  J7T60_RS03020 (J7T60_02985) - 560430..560933 (+) 504 WP_002950147.1 dihydrofolate reductase -
  J7T60_RS03025 (J7T60_02990) - 560938..561108 (+) 171 WP_002886174.1 hypothetical protein -
  J7T60_RS03030 (J7T60_02995) clpX 561126..562352 (+) 1227 WP_372433515.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  J7T60_RS03035 (J7T60_03000) yihA 562362..562961 (+) 600 WP_002950154.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  J7T60_RS03040 (J7T60_03005) - 563091..564467 (+) 1377 WP_022096961.1 amino acid permease -
  J7T60_RS03045 (J7T60_03010) mmuM 564479..565429 (+) 951 WP_179971246.1 homocysteine S-methyltransferase -
  J7T60_RS03050 (J7T60_03015) - 565542..565796 (+) 255 WP_002950164.1 DUF1912 family protein -
  J7T60_RS03055 (J7T60_03020) - 565868..566227 (+) 360 WP_002950165.1 helix-hairpin-helix domain-containing protein -
  J7T60_RS03060 (J7T60_03025) plsY 566341..566982 (-) 642 WP_002950167.1 glycerol-3-phosphate 1-O-acyltransferase PlsY -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45005.41 Da        Isoelectric Point: 4.4119

>NTDB_id=552980 J7T60_RS03030 WP_372433515.1 561126..562352(+) (clpX) [Streptococcus thermophilus strain S24735]
MAGNRNEEMVYCSFCGKNQEEVKKIIAGNGAFICNECVALSQEIIREETAEEVLADLAETPKPKELLDILNNYVVGQDRV
KRALAVAVYNHYKRINFTESREDNDVDLQKSNILMIGPTGSGKTYLAQTLARSLNVPFAIADATSLTEAGYVGEDVENIL
LKLIQAADFNIERAERGIIYVDEIDKIAKKGENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPNQEMIQIDTKN
ILFIVGGAFDGIEDIVKQRLGEKIIGFGQNNKAIDDESSYMKEIVAEDIQKFGLIPEFIGRLPVLAALEQLTVDDLVRIL
TEPRNALVKQYQTLLSYDGVELEFDQDALEAIASKAIERKTGARGLRSIIEEVMMDVMFEIPSLEDVTKVRITKEAVDGK
AAPVLETA

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=552980 J7T60_RS03030 WP_372433515.1 561126..562352(+) (clpX) [Streptococcus thermophilus strain S24735]
ATGGCTGGAAATCGTAATGAAGAGATGGTTTATTGTTCATTTTGTGGCAAAAACCAAGAAGAAGTGAAGAAAATTATCGC
CGGTAATGGCGCCTTTATCTGTAACGAATGTGTGGCCTTGTCACAAGAAATCATTCGTGAGGAAACGGCTGAAGAAGTTT
TAGCTGACTTGGCTGAAACGCCAAAGCCAAAAGAACTTTTAGATATTTTGAACAACTATGTCGTGGGGCAAGATCGTGTC
AAACGTGCCTTGGCAGTAGCTGTTTACAACCACTATAAACGTATCAACTTCACAGAAAGTCGTGAAGATAATGATGTGGA
CTTGCAAAAATCAAATATCCTCATGATTGGACCAACAGGGTCAGGGAAAACTTACTTAGCTCAGACTTTGGCTCGTAGTT
TGAATGTTCCTTTCGCGATTGCGGATGCGACATCATTGACAGAGGCAGGTTATGTGGGTGAGGATGTGGAAAATATCCTC
CTCAAACTAATCCAAGCGGCAGACTTTAATATTGAACGTGCGGAACGTGGGATTATCTACGTGGACGAGATTGATAAGAT
TGCCAAAAAAGGTGAGAATGTTTCAATCACTCGTGATGTTTCAGGTGAAGGGGTTCAACAAGCTCTCTTGAAGATTATTG
AGGGAACAGTGGCTAGCGTTCCACCTCAAGGTGGTCGTAAACACCCTAATCAAGAGATGATTCAAATTGATACTAAGAAC
ATTCTCTTTATCGTGGGTGGTGCTTTTGATGGTATCGAAGATATCGTTAAGCAACGTCTTGGTGAGAAAATCATTGGGTT
TGGTCAAAATAATAAAGCAATTGATGACGAATCATCATACATGAAAGAAATTGTGGCTGAAGATATCCAAAAATTTGGAC
TTATCCCTGAATTTATCGGACGTTTGCCAGTTCTTGCGGCCCTTGAACAGTTAACGGTTGACGACTTGGTACGTATTTTG
ACAGAGCCTAGGAATGCCTTGGTGAAGCAGTATCAAACCCTTTTGTCTTATGATGGGGTTGAACTTGAGTTTGACCAGGA
TGCCCTTGAGGCTATTGCAAGTAAGGCAATTGAACGTAAGACTGGTGCGCGTGGGCTTCGCTCTATCATTGAAGAAGTCA
TGATGGATGTTATGTTTGAAATCCCTAGTCTGGAAGATGTCACTAAGGTTCGTATCACCAAAGAAGCTGTTGATGGGAAA
GCTGCTCCAGTATTGGAAACAGCATAA

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(109-304)

ClpX C4-type zinc finger (zf-C4_ClpX)

(11-47)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(311-388)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

88.509

100

0.887
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

57.002

99.755

0.569