Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   J7U23_RS06955 Genome accession   NZ_CP072435
Coordinates   1342761..1343690 (-) Length   309 a.a.
NCBI ID   WP_179970967.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain S24736     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1337761..1348690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7U23_RS06930 (J7U23_06870) - 1339040..1339855 (-) 816 WP_179970963.1 Cof-type HAD-IIB family hydrolase -
  J7U23_RS06935 (J7U23_06875) - 1339848..1340642 (-) 795 WP_179970964.1 HAD-IIB family hydrolase -
  J7U23_RS06940 (J7U23_06880) - 1340825..1341202 (+) 378 WP_011226300.1 GntR family transcriptional regulator -
  J7U23_RS06945 (J7U23_06885) - 1341207..1341905 (+) 699 WP_372589868.1 ABC transporter ATP-binding protein -
  J7U23_RS06950 (J7U23_06890) - 1341917..1342711 (+) 795 WP_179970966.1 ABC transporter permease -
  J7U23_RS06955 (J7U23_06895) amiF 1342761..1343690 (-) 930 WP_179970967.1 ATP-binding cassette domain-containing protein Regulator
  J7U23_RS06960 (J7U23_06900) amiE 1343683..1344768 (-) 1086 WP_179970968.1 ABC transporter ATP-binding protein Regulator
  J7U23_RS06965 (J7U23_06905) amiD 1344778..1345704 (-) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  J7U23_RS06970 (J7U23_06910) amiC 1345704..1347197 (-) 1494 WP_179970969.1 ABC transporter permease Regulator

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35170.30 Da        Isoelectric Point: 6.7821

>NTDB_id=552933 J7U23_RS06955 WP_179970967.1 1342761..1343690(-) (amiF) [Streptococcus thermophilus strain S24736]
MPEKLVEVKDVEISFGEGRKKFVAVHNANFFINKGETFSLVGESGSGKTTIGRAIIGLNDTSNGEIIFDGKKINGYLSHS
EKNDLIRRIQMIFQDPAASLNERATVDYILSEGLYNFHLYKDEEERKAKIKQIIKEVGLLEEHLTRYPHEFSGGQRQRIG
IARSLVMQPDLVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGTIVEVAETEELYN
NPIHPYTKSLLSAVPIPDPILERKKVLKVYDPNQHDYSVDKPEMVEVRPGHFVWGNKTEIETYRKEQSK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=552933 J7U23_RS06955 WP_179970967.1 1342761..1343690(-) (amiF) [Streptococcus thermophilus strain S24736]
ATGCCTGAGAAATTAGTTGAAGTAAAAGATGTGGAAATTTCCTTCGGCGAAGGAAGAAAGAAGTTCGTTGCTGTCCACAA
TGCTAATTTTTTCATCAACAAGGGTGAAACCTTCTCCCTCGTTGGTGAGTCTGGTAGTGGTAAAACGACTATTGGACGTG
CCATTATCGGTTTAAATGACACAAGTAATGGTGAGATTATTTTTGACGGTAAGAAGATCAATGGATACTTATCTCACTCT
GAGAAAAACGACCTTATCCGTCGTATTCAGATGATTTTCCAAGACCCTGCGGCTAGTTTGAATGAACGTGCGACAGTCGA
TTATATCTTGTCTGAGGGCTTGTACAATTTCCATCTTTATAAAGATGAGGAAGAACGTAAGGCTAAAATCAAGCAAATCA
TCAAAGAAGTAGGACTTCTTGAGGAGCACTTAACACGTTACCCTCACGAATTTTCTGGGGGACAACGTCAACGTATCGGG
ATTGCGCGTTCTTTGGTCATGCAGCCTGATTTGGTTATCGCTGATGAACCAATCTCAGCCCTTGACGTGTCAGTTCGTGC
CCAAGTTTTGAATTTGCTTAAGAAATTCCAAAAAGAGTTGGGGTTAACCTATCTCTTTATCGCTCACGATTTGTCAGTGG
TCCGTTTCATTTCTGACCGTATCGCTGTTATCTATAAGGGGACAATCGTGGAAGTTGCTGAGACAGAAGAGCTCTACAAC
AATCCTATCCATCCTTACACCAAGTCACTCTTGTCTGCTGTTCCTATTCCAGATCCAATCTTGGAACGTAAGAAAGTCTT
GAAGGTTTATGATCCAAACCAACACGACTATTCGGTTGATAAACCAGAAATGGTGGAAGTACGCCCAGGTCACTTCGTTT
GGGGTAACAAGACAGAAATTGAGACTTATCGTAAAGAACAAAGTAAGTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(26-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMG 18311

99.676

100

0.997
  amiF Streptococcus thermophilus LMD-9

99.353

100

0.994
  amiF Streptococcus salivarius strain HSISS4

98.058

100

0.981