Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   J7U23_RS06970 Genome accession   NZ_CP072435
Coordinates   1345704..1347197 (-) Length   497 a.a.
NCBI ID   WP_179970969.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain S24736     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1340704..1352197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7U23_RS06940 (J7U23_06880) - 1340825..1341202 (+) 378 WP_011226300.1 GntR family transcriptional regulator -
  J7U23_RS06945 (J7U23_06885) - 1341207..1341905 (+) 699 WP_372589868.1 ABC transporter ATP-binding protein -
  J7U23_RS06950 (J7U23_06890) - 1341917..1342711 (+) 795 WP_179970966.1 ABC transporter permease -
  J7U23_RS06955 (J7U23_06895) amiF 1342761..1343690 (-) 930 WP_179970967.1 ATP-binding cassette domain-containing protein Regulator
  J7U23_RS06960 (J7U23_06900) amiE 1343683..1344768 (-) 1086 WP_179970968.1 ABC transporter ATP-binding protein Regulator
  J7U23_RS06965 (J7U23_06905) amiD 1344778..1345704 (-) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  J7U23_RS06970 (J7U23_06910) amiC 1345704..1347197 (-) 1494 WP_179970969.1 ABC transporter permease Regulator
  J7U23_RS06975 (J7U23_06915) amiA3 1347258..1349231 (-) 1974 WP_372589869.1 peptide ABC transporter substrate-binding protein Regulator
  J7U23_RS06980 (J7U23_06920) - 1349467..1349657 (-) 191 Protein_1321 IS3 family transposase -
  J7U23_RS06985 - 1349648..1350060 (-) 413 Protein_1322 ATP-binding cassette domain-containing protein -
  J7U23_RS06990 (J7U23_06935) - 1350092..1350406 (-) 315 Protein_1323 TatD family hydrolase -
  J7U23_RS06995 (J7U23_06940) - 1350922..1352127 (+) 1206 WP_011681420.1 OFA family MFS transporter -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 55801.61 Da        Isoelectric Point: 10.0158

>NTDB_id=552936 J7U23_RS06970 WP_179970969.1 1345704..1347197(-) (amiC) [Streptococcus thermophilus strain S24736]
MKRYILLRTLRSILSIFVVTALTYTIIYTMVPRHLIFRQDPNYNKIAKTADSKTNYENTIFERMGYIDYYDTKELQENAS
TLDKSVTTKPTKANKAIYQKYVDSLGHGWRLHQFKQSKQFYATRDVPVLERVFEFYTHLFEFDNTGWVKDKTNPNLKRYI
RIENDPAIGWSVVGSGTKHKYLLYFNSQFPFVHQNFVKMNLGTSYPTYAGQGVLDVITQGQGQTKSSVVNFPTGKKISSV
DIYSRTYKSPSQADARDRSYYGDDPYTSTKSRYQYPSMVTSSAIAGLIGLVLSYALAIPLGSYMARFKNTLFDSVLTGVL
TFLLSLPTIALVYIIRLIGSEIGLPDSFPILGAGDWRSYVLPSVILGLLSTPGLAIWIRRYMIDLQSQDFVRFARAKGLS
EQEISNKHILKNAMVSLVSGIPASIVGVITGATLTETIFAYPGMGKMLIDSVRASNNAMVVGLVFIFTALSIFSLLVGDI
LMTIIDPRIKLTSKGGK

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=552936 J7U23_RS06970 WP_179970969.1 1345704..1347197(-) (amiC) [Streptococcus thermophilus strain S24736]
ATGAAAAGATATATTTTATTGAGAACCCTCCGTTCTATATTGTCAATATTTGTCGTGACGGCCTTGACCTACACGATTAT
CTATACCATGGTGCCGAGGCATCTGATTTTCAGACAGGACCCTAACTACAATAAGATTGCAAAGACAGCTGATTCTAAGA
CAAACTATGAAAATACAATCTTTGAACGTATGGGGTACATTGATTACTATGACACCAAGGAGTTGCAGGAGAATGCCAGC
ACACTTGATAAGTCGGTAACAACTAAGCCAACAAAAGCCAATAAAGCTATCTACCAAAAATATGTGGATAGTTTGGGACA
TGGCTGGCGTTTGCATCAGTTCAAGCAAAGTAAGCAATTCTATGCGACACGTGATGTACCAGTGCTTGAACGTGTGTTTG
AATTCTACACGCACCTCTTTGAATTTGACAATACTGGATGGGTTAAAGATAAAACAAATCCAAACTTGAAGCGTTACATC
CGTATTGAAAATGATCCAGCTATTGGTTGGTCGGTTGTTGGTTCAGGGACTAAGCACAAATATTTGCTTTACTTTAACAG
TCAGTTCCCGTTTGTTCACCAAAATTTTGTGAAGATGAATCTTGGAACTTCATACCCAACTTATGCTGGGCAAGGTGTTC
TTGATGTTATTACACAAGGCCAAGGACAGACAAAAAGCTCTGTGGTTAACTTCCCTACTGGTAAGAAAATATCTTCAGTA
GATATCTATTCTCGTACTTATAAATCACCTAGTCAGGCTGACGCTAGAGATCGTTCTTACTATGGTGATGATCCGTACAC
ATCTACTAAGAGTCGTTATCAATATCCATCAATGGTGACAAGTTCTGCCATTGCAGGTTTGATTGGTTTGGTCTTGTCTT
ATGCTTTAGCGATTCCATTGGGATCTTACATGGCACGCTTTAAAAATACACTCTTTGATAGTGTGTTAACAGGCGTCTTG
ACTTTCTTGCTTTCACTACCAACCATCGCCTTGGTTTATATCATTCGTTTGATTGGTTCTGAGATTGGTCTTCCAGATTC
CTTCCCTATCTTGGGTGCAGGTGACTGGCGTTCATACGTCTTGCCATCTGTTATTCTCGGTCTCTTGTCAACACCAGGTC
TTGCGATTTGGATTCGTCGTTACATGATTGACTTGCAATCACAAGACTTTGTTCGCTTTGCACGTGCCAAAGGGTTGTCA
GAACAAGAAATTTCAAATAAACACATTTTAAAAAACGCTATGGTTTCCTTGGTTTCAGGGATCCCAGCATCTATTGTTGG
GGTTATCACAGGGGCAACCTTGACAGAAACAATCTTCGCCTACCCTGGTATGGGTAAAATGTTGATCGATTCTGTTCGTG
CTTCTAATAATGCTATGGTCGTTGGGCTGGTATTTATTTTTACAGCTCTCTCCATCTTCTCATTGCTTGTGGGTGATATC
CTTATGACTATTATTGACCCACGTATCAAATTGACATCTAAAGGAGGTAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(297-490)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus thermophilus LMD-9

96.579

100

0.966
  amiC Streptococcus thermophilus LMG 18311

96.579

100

0.966
  amiC Streptococcus salivarius strain HSISS4

95.976

100

0.96