Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   J7U23_RS02260 Genome accession   NZ_CP072435
Coordinates   413538..413981 (+) Length   147 a.a.
NCBI ID   WP_372589959.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain S24736     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 408538..418981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7U23_RS02240 (J7U23_02240) - 409059..409813 (-) 755 Protein_380 NUDIX domain-containing protein -
  J7U23_RS02245 (J7U23_02245) - 409877..410983 (-) 1107 Protein_381 AAA family ATPase -
  J7U23_RS02250 (J7U23_02250) gdhA 411327..412679 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  J7U23_RS02255 (J7U23_02255) - 412936..413346 (+) 411 WP_011225559.1 peptide deformylase -
  J7U23_RS02260 (J7U23_02260) rcrR 413538..413981 (+) 444 WP_372589959.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  J7U23_RS02265 (J7U23_02265) rcrP 413985..415799 (+) 1815 WP_084829391.1 ABC transporter ATP-binding protein Regulator
  J7U23_RS02270 (J7U23_02270) rcrQ 415789..417567 (+) 1779 WP_207559749.1 ABC transporter ATP-binding protein Regulator
  J7U23_RS02275 (J7U23_02275) - 417723..418094 (+) 372 WP_041829277.1 hypothetical protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17033.43 Da        Isoelectric Point: 9.5790

>NTDB_id=552911 J7U23_RS02260 WP_372589959.1 413538..413981(+) (rcrR) [Streptococcus thermophilus strain S24736]
MHGKDSFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAEIAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=552911 J7U23_RS02260 WP_372589959.1 413538..413981(+) (rcrR) [Streptococcus thermophilus strain S24736]
ATGCATGGGAAAGATTCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGCGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAATAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

55.319

95.918

0.531