Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   LXA49_RS10995 Genome accession   NZ_CP089949
Coordinates   2135728..2136825 (+) Length   365 a.a.
NCBI ID   WP_000266661.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain SN75752     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2130728..2141825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXA49_RS10970 (LXA49_10955) pgsA 2131249..2131794 (-) 546 WP_000712132.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LXA49_RS10975 (LXA49_10960) rodZ 2131805..2132626 (-) 822 WP_001227958.1 cytoskeleton protein RodZ -
  LXA49_RS10980 (LXA49_10965) - 2132668..2133951 (-) 1284 WP_000170191.1 pitrilysin family protein -
  LXA49_RS10985 (LXA49_10970) - 2133948..2135198 (-) 1251 WP_000424269.1 pitrilysin family protein -
  LXA49_RS10990 (LXA49_10975) - 2135357..2135725 (+) 369 WP_000455898.1 RNA-binding S4 domain-containing protein -
  LXA49_RS10995 (LXA49_10980) recF 2135728..2136825 (+) 1098 WP_000266661.1 DNA replication/repair protein RecF Machinery gene
  LXA49_RS11000 (LXA49_10985) guaB 2136876..2138354 (-) 1479 WP_000073428.1 IMP dehydrogenase -
  LXA49_RS11005 (LXA49_10990) trpS 2138506..2139531 (-) 1026 WP_000165446.1 tryptophan--tRNA ligase -
  LXA49_RS11010 (LXA49_10995) - 2139737..2141359 (+) 1623 WP_000958769.1 ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 365 a.a.        Molecular weight: 41999.13 Da        Isoelectric Point: 9.3081

>NTDB_id=552870 LXA49_RS10995 WP_000266661.1 2135728..2136825(+) (recF) [Streptococcus pneumoniae strain SN75752]
MWLQHLSLKTFRNYKETKIDFNPKLNVFLGRNAQGKTNMLEAIYFLALTRSHRTRTDKNLIHFDEEQLHLSGLVQKKTGS
IPLEIELTQKGRVTKVNHLKQARLSDYVGHMNVVLFAPEDLQLIKGAPSIRRKFIDMELGQIKPIYLSDLTNYNHILKQR
NTYLKSAQKIDETFLSVLDDQLVDYGCRVMNHRLDFIKKLESFGRKKHFELSNQIEELSISYQSSVNITDKQNLSESFKI
ALEKSRSRDLFKKNTGVGPHRDDISFYINGMDASFGSQGQHRSLVLSIKLAEIELMESITTESPILLLDDVMSELDNTRQ
LKLLETISQSIQTFITTTSLDHLQNLPENLSIFTIQDGKAAVNRN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=552870 LXA49_RS10995 WP_000266661.1 2135728..2136825(+) (recF) [Streptococcus pneumoniae strain SN75752]
ATGTGGCTACAACATCTATCTCTCAAGACTTTTCGTAATTACAAAGAAACGAAAATAGACTTTAATCCTAAATTGAATGT
CTTTTTGGGACGTAATGCACAAGGAAAAACAAACATGTTAGAGGCTATCTATTTTTTAGCCTTAACGCGTAGTCATCGAA
CTCGAACAGATAAAAATCTCATTCATTTTGATGAGGAACAACTTCATCTTTCAGGTCTCGTTCAGAAAAAAACTGGATCC
ATTCCCCTAGAAATCGAACTAACACAAAAAGGCCGTGTAACAAAAGTTAATCACTTAAAACAGGCACGCCTTTCAGATTA
TGTAGGACACATGAATGTTGTCTTATTTGCTCCTGAAGATTTACAACTAATTAAAGGAGCACCTTCGATTCGACGAAAAT
TCATTGATATGGAACTTGGGCAAATTAAGCCAATCTATTTATCTGACTTAACCAATTATAACCACATCCTAAAGCAAAGA
AACACTTACCTAAAATCAGCTCAAAAAATAGATGAAACATTCCTTTCTGTGTTAGATGATCAGCTAGTTGATTATGGATG
TCGTGTAATGAATCACCGCTTAGATTTCATAAAAAAACTAGAATCATTTGGGCGTAAGAAACATTTTGAACTCTCTAATC
AGATCGAAGAGTTGTCAATATCCTATCAATCTTCTGTCAATATAACTGACAAACAAAACTTATCCGAATCTTTCAAAATT
GCTTTAGAAAAAAGTAGATCCAGAGATTTATTTAAAAAGAATACTGGTGTCGGTCCTCATCGAGATGACATTTCTTTTTA
TATAAATGGGATGGATGCTAGTTTCGGAAGCCAAGGTCAACATCGTAGTCTCGTCCTCTCGATAAAATTAGCAGAAATCG
AATTAATGGAAAGCATTACCACAGAATCTCCGATATTACTGCTTGACGATGTGATGAGTGAACTTGACAACACTAGACAG
TTAAAATTATTAGAAACGATTTCTCAATCAATCCAAACCTTTATCACAACAACAAGCTTAGACCATCTTCAAAATCTGCC
AGAAAATCTAAGTATCTTCACTATTCAGGATGGTAAAGCTGCTGTAAATAGAAATTGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

99.452

100

0.995
  recF Bacillus subtilis subsp. subtilis str. 168

45.902

100

0.46