Detailed information    

insolico Bioinformatically predicted

Overview

Name   micB   Type   Regulator
Locus tag   LXA49_RS06015 Genome accession   NZ_CP089949
Coordinates   1194676..1196025 (-) Length   449 a.a.
NCBI ID   WP_000886213.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain SN75752     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1189676..1201025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LXA49_RS05985 (LXA49_05975) - 1189788..1190774 (+) 987 WP_000204727.1 L-lactate dehydrogenase -
  LXA49_RS05990 (LXA49_05980) - 1191063..1191806 (-) 744 Protein_1200 ion channel -
  LXA49_RS05995 (LXA49_05985) - 1191853..1192107 (-) 255 WP_001809704.1 type II toxin-antitoxin system RelE/ParE family toxin -
  LXA49_RS06000 (LXA49_05990) relB 1192109..1192351 (-) 243 WP_000208080.1 type II toxin-antitoxin system RelB family antitoxin -
  LXA49_RS06005 (LXA49_05995) - 1192545..1193801 (+) 1257 WP_000530081.1 ISL3 family transposase -
  LXA49_RS06010 (LXA49_06000) vicX 1193865..1194674 (-) 810 WP_001289493.1 MBL fold metallo-hydrolase Regulator
  LXA49_RS06015 (LXA49_06005) micB 1194676..1196025 (-) 1350 WP_000886213.1 cell wall metabolism sensor histidine kinase VicK Regulator
  LXA49_RS06020 (LXA49_06010) yycF 1196018..1196722 (-) 705 WP_000722076.1 response regulator YycF -
  LXA49_RS06025 (LXA49_06015) mutY 1196778..1197953 (-) 1176 WP_000886152.1 A/G-specific adenine glycosylase -
  LXA49_RS11155 - 1198050..1198175 (+) 126 WP_001818232.1 hypothetical protein -
  LXA49_RS06030 (LXA49_06020) - 1198281..1199951 (-) 1671 WP_000845285.1 formate--tetrahydrofolate ligase -
  LXA49_RS06035 (LXA49_06025) coaB 1200181..1200870 (+) 690 WP_000699494.1 phosphopantothenate--cysteine ligase -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 51688.43 Da        Isoelectric Point: 4.9098

>NTDB_id=552807 LXA49_RS06015 WP_000886213.1 1194676..1196025(-) (micB) [Streptococcus pneumoniae strain SN75752]
MLDLLKQTIFTRDFIFILILLGFILVVTLLLLENRRDNIQLKQINQKVKDLIAGDYSKVLDMQGGSEITNITNNLNDLSE
VIRLTQENLEQESKRLNSILFYMTDGVLATNRRGQIIMINDTAKKQLGLVKEDVLNRSILELLKIEENYELRDLITQSPE
LLLDSQDINGEYLNLRVRFALIRRESGFISGLVAVLHDTTEQEKEERERRLFVSNVSHELRTPLTSVKSYLEALDEGALC
ETVAPDFIKVSLDETNRMMRMVTDLLHLSRIDNATSLLDVELINFTAFITFILNRFDKMKGQEKEKKYELVRDYPINSIW
MEIDTDKMTQVVDNILNNAIKYSPDGGKITVRMKTTEDQMILSISDHGLGIPKQDLPRIFDRFYRVDRARSRAQGGTGLG
LSIAKEIIKQHKGFIWAKSEYGKGSTFTIVLPYDKDAVKEEVWEDEVED

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=552807 LXA49_RS06015 WP_000886213.1 1194676..1196025(-) (micB) [Streptococcus pneumoniae strain SN75752]
ATGCTTGATTTACTGAAACAAACCATTTTTACCAGAGATTTTATCTTTATCCTGATTTTGTTAGGTTTCATCCTTGTTGT
GACCCTCTTATTACTGGAAAATAGACGTGATAATATTCAGTTGAAGCAAATCAATCAAAAGGTTAAAGATTTGATTGCAG
GAGATTATTCCAAGGTTCTTGATATGCAAGGTGGGTCTGAAATCACCAATATTACCAATAATTTGAATGACTTGTCGGAG
GTTATTCGTCTCACTCAGGAAAATCTAGAACAAGAGAGTAAGAGGCTAAATAGTATTCTGTTTTATATGACAGATGGGGT
TCTTGCGACCAACCGTCGGGGTCAGATTATCATGATTAATGATACAGCCAAGAAGCAACTGGGGTTGGTTAAGGAAGATG
TTCTGAATAGAAGCATTTTGGAATTGCTCAAGATAGAAGAAAACTATGAATTGCGTGATTTGATTACCCAAAGTCCAGAA
TTGTTGCTAGATTCCCAAGATATCAATGGCGAATATTTGAACCTTCGAGTTCGCTTTGCCTTGATACGTCGAGAGTCTGG
CTTTATTTCAGGTTTGGTGGCTGTTTTGCATGATACGACGGAGCAGGAGAAGGAAGAACGAGAACGAAGACTCTTTGTTT
CCAATGTTAGCCATGAGTTACGGACTCCTCTGACTAGCGTAAAATCCTATCTTGAAGCCTTGGATGAGGGGGCTTTGTGT
GAAACTGTAGCACCAGACTTTATCAAGGTTTCTCTTGATGAGACCAACCGTATGATGCGCATGGTGACGGATCTCCTCCA
TCTTTCACGTATTGATAATGCTACCAGTCTCCTAGATGTGGAACTGATTAACTTCACTGCTTTTATTACCTTTATCCTCA
ATCGTTTTGACAAGATGAAAGGACAGGAAAAGGAGAAAAAATATGAGTTGGTGAGAGATTATCCCATCAATTCTATCTGG
ATGGAAATTGATACAGATAAGATGACGCAGGTTGTCGACAATATTTTAAATAATGCTATTAAGTATTCGCCAGATGGGGG
TAAAATCACTGTCAGAATGAAGACAACTGAAGACCAGATGATTTTATCCATTTCTGACCACGGTTTGGGGATTCCTAAGC
AGGATTTACCACGTATCTTTGACCGTTTCTATCGTGTGGATCGTGCTAGAAGTCGTGCACAAGGTGGTACAGGTCTAGGA
CTGTCTATCGCTAAAGAAATTATCAAACAACATAAGGGCTTTATTTGGGCCAAGAGTGAATACGGCAAGGGTTCAACCTT
TACCATTGTGCTCCCTTATGATAAGGATGCAGTGAAAGAAGAAGTATGGGAGGATGAAGTAGAAGACTAG

Domains

Predicted by InterProScan.

PAS fold (PAS)

(98-198)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(324-434)

His Kinase A (phospho-acceptor) domain (HisKA)

(209-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  micB Streptococcus pneumoniae Cp1015

99.555

100

0.996
  vicK Streptococcus mutans UA159

69.652

89.532

0.624