Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   J7U07_RS02270 Genome accession   NZ_CP072433
Coordinates   420832..421275 (+) Length   147 a.a.
NCBI ID   WP_002945408.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain S24743     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 415832..426275
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7U07_RS02250 (J7U07_02220) - 416352..417106 (-) 755 Protein_382 NUDIX domain-containing protein -
  J7U07_RS02255 (J7U07_02225) - 417170..418276 (-) 1107 WP_014608024.1 AAA family ATPase -
  J7U07_RS02260 (J7U07_02230) gdhA 418620..419972 (+) 1353 WP_011680803.1 NADP-specific glutamate dehydrogenase -
  J7U07_RS02265 (J7U07_02235) - 420231..420641 (+) 411 WP_011680804.1 peptide deformylase -
  J7U07_RS02270 (J7U07_02240) rcrR 420832..421275 (+) 444 WP_002945408.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  J7U07_RS02275 (J7U07_02245) rcrP 421279..423093 (+) 1815 WP_179971475.1 ABC transporter ATP-binding protein Regulator
  J7U07_RS02280 (J7U07_02250) rcrQ 423083..424861 (+) 1779 WP_207559749.1 ABC transporter ATP-binding protein Regulator
  J7U07_RS02285 (J7U07_02255) - 425016..425387 (+) 372 WP_041829277.1 hypothetical protein -

Sequence

Protein


Download         Length: 147 a.a.        Molecular weight: 17031.41 Da        Isoelectric Point: 9.5790

>NTDB_id=552793 J7U07_RS02270 WP_002945408.1 420832..421275(+) (rcrR) [Streptococcus thermophilus strain S24743]
MHGKDPFSDFREFINTMESRVQELGKAYGVEHLAGPQGFAVRYLFENQDKEIFIKDIEKKLSISKSVASNLVKRMEKNGF
VELVTSDKDKRYKYVHLTDLGKKKAQDVGHFREAIHGQLLDGISKEDAETAFRVFHQIRKNLEKNKE

Nucleotide


Download         Length: 444 bp        

>NTDB_id=552793 J7U07_RS02270 WP_002945408.1 420832..421275(+) (rcrR) [Streptococcus thermophilus strain S24743]
ATGCATGGTAAAGATCCTTTTAGTGACTTCAGAGAATTCATCAATACTATGGAGTCTCGCGTGCAAGAGTTAGGTAAAGC
GTATGGTGTTGAGCATTTAGCTGGTCCACAAGGGTTTGCCGTTAGGTACTTGTTTGAGAACCAAGATAAAGAAATATTTA
TCAAAGATATTGAGAAAAAACTATCTATTTCCAAGTCAGTGGCTAGTAATTTGGTCAAACGTATGGAGAAAAATGGTTTT
GTTGAATTGGTGACATCTGACAAGGACAAACGCTACAAGTATGTTCATCTGACAGACTTAGGCAAAAAGAAGGCTCAAGA
CGTCGGACATTTCCGAGAGGCTATCCATGGACAGTTATTAGATGGTATTTCGAAAGAAGATGCTGAAACAGCATTTCGAG
TCTTTCACCAAATTCGTAAGAATTTAGAGAAAAATAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(42-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

56.028

95.918

0.537