Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   J7U00_RS02270 Genome accession   NZ_CP072431
Coordinates   417670..418704 (+) Length   344 a.a.
NCBI ID   WP_024703983.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain S24745     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 412670..423704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7U00_RS02235 (J7U00_02250) - 413227..414402 (-) 1176 WP_014608082.1 IS256-like element IS1191 family transposase -
  J7U00_RS02240 - 414579..414704 (+) 126 WP_011681534.1 hypothetical protein -
  J7U00_RS02245 (J7U00_02255) - 414723..415358 (+) 636 WP_014727665.1 DUF4230 domain-containing protein -
  J7U00_RS02250 (J7U00_02260) - 415377..416108 (+) 732 WP_014608636.1 hypothetical protein -
  J7U00_RS02255 (J7U00_02265) - 416150..416458 (-) 309 WP_014608635.1 hypothetical protein -
  J7U00_RS02260 (J7U00_02270) - 416455..416874 (-) 420 WP_011681530.1 HIT family protein -
  J7U00_RS02265 (J7U00_02275) pptA 416939..417670 (+) 732 WP_002951673.1 ABC transporter ATP-binding protein Regulator
  J7U00_RS02270 (J7U00_02280) pptB 417670..418704 (+) 1035 WP_024703983.1 ABC transporter permease Regulator
  J7U00_RS02275 (J7U00_02285) ccrZ 418762..419553 (+) 792 WP_002951667.1 cell cycle regulator CcrZ -
  J7U00_RS02280 (J7U00_02290) trmB 419563..420204 (+) 642 WP_002947526.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  J7U00_RS02290 (J7U00_02300) - 420440..421621 (-) 1182 WP_002951656.1 NAD(P)/FAD-dependent oxidoreductase -
  J7U00_RS02295 (J7U00_02305) ilvD 421734..423452 (+) 1719 WP_011226435.1 dihydroxy-acid dehydratase -

Sequence


Protein


Download         Length: 344 a.a.        Molecular weight: 40019.52 Da        Isoelectric Point: 10.5812

>NTDB_id=552740 J7U00_RS02270 WP_024703983.1 417670..418704(+) (pptB) [Streptococcus thermophilus strain S24745]
MAELFKERSRRFTTRCAKYSRYVFNDHFILVLLFLLGFVLVQYSQLLRHFPKNPWAIILGLLVLCLLLPFWGNIATYLEP
ADKHYLLVKEEEVLDHIKKATGRAFRFWVLIQTLIFILVVPLFLALGLPVWGVVLIAVAMAILKYFIFQKKAQPFYKQSG
LNWTDAIAAENKRQQSILKFFSLFTNVKGITSSVKRRGYLDGILKRTKKDKKYTWYNLYLRAFLRSGDYVALSLRLFALT
LLVIFLVPEKWLAMVLVVVFDYLLLFQLTALKSHFAYQRMANLMPIGKDMQVSNLKRLINQIVLVMTLIQALCLFDLKFS
LILIGVMLVLSLVYLPAKLKKMID

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=552740 J7U00_RS02270 WP_024703983.1 417670..418704(+) (pptB) [Streptococcus thermophilus strain S24745]
ATAGCTGAGCTTTTTAAGGAGCGTAGCAGACGATTCACTACCCGTTGTGCTAAGTATAGTCGCTACGTCTTTAATGACCA
CTTTATCCTGGTTCTTCTTTTTTTGCTGGGTTTTGTCTTGGTTCAGTATAGCCAGTTGCTCCGACATTTTCCAAAGAATC
CATGGGCCATCATTCTTGGCTTACTTGTGCTTTGTCTTTTACTTCCTTTTTGGGGTAATATTGCCACCTATTTAGAGCCT
GCAGACAAGCACTACCTCTTAGTTAAGGAAGAAGAGGTGCTAGACCATATTAAGAAGGCGACAGGGCGTGCTTTTAGATT
TTGGGTACTCATCCAGACCTTGATTTTTATCTTGGTCGTTCCACTCTTTCTGGCCTTGGGTCTTCCAGTTTGGGGAGTTG
TCCTTATAGCCGTGGCTATGGCTATTCTTAAGTATTTTATTTTCCAAAAGAAAGCACAACCTTTTTATAAGCAGTCTGGA
TTGAATTGGACTGATGCTATTGCAGCGGAGAATAAACGACAACAATCAATCTTGAAGTTTTTCTCACTCTTTACCAATGT
TAAGGGAATTACATCGAGTGTTAAACGCCGTGGCTATTTGGATGGCATTCTCAAGCGTACAAAGAAAGACAAGAAATATA
CGTGGTACAACCTGTACCTAAGAGCCTTCTTACGTTCAGGAGATTACGTTGCCCTTAGCCTACGCCTTTTTGCTTTAACA
CTTTTGGTTATTTTTTTGGTTCCTGAAAAATGGCTGGCTATGGTACTTGTGGTTGTTTTTGACTATCTCTTACTCTTCCA
GCTCACAGCGCTTAAATCGCACTTTGCTTACCAAAGGATGGCCAACCTTATGCCAATTGGAAAAGACATGCAGGTGAGCA
ATCTTAAGCGCTTGATTAATCAAATTGTCCTTGTAATGACACTGATTCAGGCTCTTTGTCTCTTTGACCTTAAATTTAGC
CTGATTTTGATTGGAGTTATGCTAGTTTTGAGTCTTGTTTACCTACCAGCCAAGCTTAAGAAGATGATTGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus thermophilus LMD-9

100

100

1

  pptB Streptococcus salivarius strain HSISS4

92.733

100

0.927