Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   LVO07_RS19470 Genome accession   NZ_CP089930
Coordinates   4116597..4117379 (+) Length   260 a.a.
NCBI ID   WP_225762607.1    Uniprot ID   -
Organism   Escherichia coli strain E69     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4111597..4122379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVO07_RS19460 (LVO07_19460) - 4113059..4113916 (-) 858 WP_024212694.1 helix-turn-helix domain-containing protein -
  LVO07_RS19465 (LVO07_19465) - 4114619..4116481 (+) 1863 WP_233073962.1 metallophosphoesterase -
  LVO07_RS19470 (LVO07_19470) pilD 4116597..4117379 (+) 783 WP_225762607.1 A24 family peptidase Machinery gene
  LVO07_RS19475 (LVO07_19475) gspS2 4117437..4117841 (+) 405 WP_225762608.1 type II secretion system pilot lipoprotein GspS-beta -
  LVO07_RS19480 (LVO07_19480) gspC 4117995..4118831 (+) 837 WP_300980031.1 type II secretion system protein GspC -
  LVO07_RS19485 (LVO07_19485) gspD 4118867..4120924 (+) 2058 WP_024165166.1 type II secretion system secretin GspD -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 28966.33 Da        Isoelectric Point: 8.3679

>NTDB_id=552628 LVO07_RS19470 WP_225762607.1 4116597..4117379(+) (pilD) [Escherichia coli strain E69]
MALYFILFFIGLITGSFLNVVIWRYPIMCKQQLAEFQGDIDSSQPKISLVRPRSHCSYCRQTLRVYDIIPLFSWLILKGY
CRNCHEKIGLRYPLTELLTAFSFLLAWFVWPANIWSVAVMILSALLIAASFIDIEHQWLPDVFTQGILWTGLIVAWTQQS
PLSLHEAVTGVLAGFASFYSLRWGAGIVLRKESLGMGDVLLFAGLGGWVGASSLPYVALIASLSGLVYAVIMRNQSGLLP
FGPCLSLGGLATLYVQRMCQ

Nucleotide


Download         Length: 783 bp        

>NTDB_id=552628 LVO07_RS19470 WP_225762607.1 4116597..4117379(+) (pilD) [Escherichia coli strain E69]
TTGGCACTTTACTTTATTTTATTCTTTATTGGACTTATCACAGGTAGTTTTCTGAATGTCGTAATTTGGCGTTATCCAAT
CATGTGCAAACAGCAACTGGCAGAATTTCAGGGAGATATTGATAGCTCACAACCCAAAATTAGCCTTGTCCGACCTCGCT
CACACTGCTCATATTGTCGTCAGACTCTGCGGGTTTACGATATTATTCCTTTATTCTCATGGTTGATACTAAAGGGATAT
TGCCGTAACTGCCATGAGAAAATTGGTTTGCGCTATCCGTTGACCGAATTATTAACCGCTTTCTCCTTTTTACTTGCGTG
GTTTGTCTGGCCAGCCAATATCTGGAGTGTAGCGGTAATGATTTTATCTGCTTTGCTGATCGCTGCGAGTTTCATCGACA
TTGAGCATCAATGGTTACCCGACGTATTTACTCAGGGCATATTGTGGACAGGCCTGATTGTCGCATGGACACAGCAAAGT
CCGTTGTCATTACATGAAGCAGTTACTGGCGTGCTTGCGGGATTCGCCTCCTTTTATTCCCTAAGATGGGGGGCCGGAAT
CGTTCTACGGAAAGAGTCGCTGGGTATGGGGGATGTATTATTGTTTGCCGGGTTAGGTGGTTGGGTAGGGGCATCATCAT
TGCCCTATGTGGCACTGATTGCTTCACTCAGTGGCTTAGTGTATGCCGTCATTATGAGAAACCAATCAGGCCTGTTGCCC
TTTGGACCCTGTCTCAGTTTAGGCGGTTTAGCGACTCTCTATGTCCAGAGAATGTGTCAGTGA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(120-229)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(10-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

42

96.154

0.404
  pilD Vibrio campbellii strain DS40M4

38.672

98.462

0.381
  pilD Neisseria gonorrhoeae MS11

39.2

96.154

0.377
  pilD Acinetobacter nosocomialis M2

37.354

98.846

0.369
  pilD Acinetobacter baumannii D1279779

36.576

98.846

0.362