Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   J7T92_RS01545 Genome accession   NZ_CP072429
Coordinates   280750..281040 (+) Length   96 a.a.
NCBI ID   WP_081004984.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain S24747     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 275750..286040
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J7T92_RS01515 (J7T92_01525) - 276500..277009 (+) 510 WP_014607952.1 tRNA (cytidine(34)-2'-O)-methyltransferase -
  J7T92_RS01520 (J7T92_01530) - 277321..277878 (+) 558 WP_002949523.1 ECF transporter S component -
  J7T92_RS01525 (J7T92_01535) - 277881..278531 (+) 651 WP_011225447.1 phosphatase PAP2 family protein -
  J7T92_RS01530 (J7T92_01540) comR 278726..279625 (+) 900 WP_014607953.1 helix-turn-helix domain-containing protein Regulator
  J7T92_RS01535 - 279863..280294 (+) 432 Protein_249 cysteine peptidase family C39 domain-containing protein -
  J7T92_RS01540 comA 280309..280719 (+) 411 WP_216593071.1 ABC transporter transmembrane domain-containing protein Regulator
  J7T92_RS01545 (J7T92_01555) comA 280750..281040 (+) 291 WP_081004984.1 ABC transporter transmembrane domain-containing protein Regulator
  J7T92_RS01550 comA 281062..281271 (+) 210 WP_002946147.1 hypothetical protein Regulator
  J7T92_RS01555 (J7T92_01565) - 281326..281894 (+) 569 Protein_253 ATP-binding cassette domain-containing protein -
  J7T92_RS01560 (J7T92_01570) - 282002..282319 (+) 318 WP_011225454.1 DUF805 domain-containing protein -
  J7T92_RS01565 - 282282..282566 (-) 285 WP_014727318.1 hypothetical protein -
  J7T92_RS01570 - 282806..283702 (-) 897 WP_224102957.1 urease cluster protein -
  J7T92_RS01575 (J7T92_01580) - 284107..284622 (+) 516 WP_002949547.1 AmiS/UreI family transporter -
  J7T92_RS01580 (J7T92_01585) - 284647..284949 (+) 303 WP_002886558.1 urease subunit gamma -
  J7T92_RS01585 (J7T92_01590) - 284961..285272 (+) 312 WP_002886559.1 urease subunit beta -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 11403.31 Da        Isoelectric Point: 8.3772

>NTDB_id=552622 J7T92_RS01545 WP_081004984.1 280750..281040(+) (comA) [Streptococcus thermophilus strain S24747]
MIILAFYKLFEKENYQLMEANSQVNTAIIDDLRGIETLKSLRVKERRYQEIEVKFHDYLKKSLSEAKWKLTQDGLKTEVQ
LVSNVFILWYGAQLVM

Nucleotide


Download         Length: 291 bp        

>NTDB_id=552622 J7T92_RS01545 WP_081004984.1 280750..281040(+) (comA) [Streptococcus thermophilus strain S24747]
TTGATTATTCTGGCCTTTTATAAGCTTTTTGAGAAGGAAAATTATCAATTAATGGAGGCAAATAGTCAGGTCAATACTGC
TATTATTGATGATTTACGTGGTATTGAAACTTTAAAATCTTTAAGAGTTAAAGAGAGACGTTACCAAGAAATTGAGGTGA
AATTCCATGACTACTTGAAGAAATCTTTGTCTGAGGCCAAGTGGAAATTAACTCAGGATGGCTTAAAAACAGAGGTTCAG
TTAGTTTCCAATGTCTTTATCTTATGGTATGGGGCACAATTGGTTATGTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(3-96)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus pneumoniae TIGR4

50

100

0.5
  comA Streptococcus pneumoniae D39

50

100

0.5
  comA Streptococcus pneumoniae R6

50

100

0.5
  comA Streptococcus mitis NCTC 12261

50

100

0.5
  comA Streptococcus mitis SK321

50

100

0.5
  comA Streptococcus pneumoniae Rx1

50

100

0.5
  comA Streptococcus gordonii str. Challis substr. CH1

48.958

100

0.49
  comA/nlmT Streptococcus mutans UA159

47.917

100

0.479