Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   LVO07_RS14410 Genome accession   NZ_CP089930
Coordinates   3059372..3061033 (-) Length   553 a.a.
NCBI ID   WP_225762356.1    Uniprot ID   -
Organism   Escherichia coli strain E69     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3054372..3066033
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVO07_RS14375 (LVO07_14375) - 3054572..3055228 (-) 657 WP_233073805.1 hypothetical protein -
  LVO07_RS14380 (LVO07_14380) - 3055479..3056708 (-) 1230 WP_225762355.1 integrase domain-containing protein -
  LVO07_RS14390 (LVO07_14390) smpB 3057450..3057932 (-) 483 WP_000162574.1 SsrA-binding protein SmpB -
  LVO07_RS14395 (LVO07_14395) ratA 3058103..3058540 (+) 438 WP_024191158.1 type II toxin-antitoxin system toxin RatA -
  LVO07_RS14400 (LVO07_14400) yfjF 3058530..3058820 (+) 291 WP_001117836.1 RnfH family protein -
  LVO07_RS14405 (LVO07_14405) bamE 3058879..3059223 (-) 345 WP_001203438.1 outer membrane protein assembly factor BamE -
  LVO07_RS14410 (LVO07_14410) recN 3059372..3061033 (-) 1662 WP_225762356.1 DNA repair protein RecN Machinery gene
  LVO07_RS14415 (LVO07_14415) nadK 3061119..3061997 (-) 879 WP_001059169.1 NAD(+) kinase -
  LVO07_RS14420 (LVO07_14420) grpE 3062120..3062710 (+) 591 WP_001300112.1 nucleotide exchange factor GrpE -
  LVO07_RS14425 (LVO07_14425) - 3062746..3063351 (-) 606 WP_225762357.1 cytoplasmic protein -
  LVO07_RS14430 (LVO07_14430) yfjD 3063473..3064759 (-) 1287 WP_032149952.1 HlyC/CorC family transporter -
  LVO07_RS14435 (LVO07_14435) ypjD 3064780..3065571 (-) 792 WP_024165125.1 inner membrane protein YpjD -

Sequence

Protein


Download         Length: 553 a.a.        Molecular weight: 61342.40 Da        Isoelectric Point: 5.3415

>NTDB_id=552610 LVO07_RS14410 WP_225762356.1 3059372..3061033(-) (recN) [Escherichia coli strain E69]
MLAQLTISNFAIVRELEIDFHSGMTVITGETGAGKSIAIDALGLCLGGRAEADMVRTGAARADLCARFSLKDTPAALRWL
EENQLEDGHECLLRRVISSDGRSRGFINGTAVPLSQLRELGQLLIQIHGQHAHQLLTKPEHQKFLLDGYANETSLLQEMT
ARYQLWHQSCRDLAHHQQLSQERAARAELLQYQLKELNEFNPQPGEFEQIDEEYKRLANSGQLLTTSQNALALMADGEDA
NLQSQLYTAKQLVSELIGMDSKLSGVLDMLEEATIQIAEASDELRHYCDRLDLDPNRLFELEQRISKQISLARKHHVSPE
ALPQYYQSLLEEQQQLDDQADSQETLALAVTKHHQQALETARALHLQRQHYATELAQLITDSMQALSMPHGQFTIDVKFD
EHHLGADGADRIEFRVTTNPGQPMQPIAKVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQL
GESTQVMCVTHLPQVAGCGHQHYFVSKETDGAMTETHMQSLDKKARLQELARLLGGSEVTRNTLANAKELLAA

Nucleotide


Download         Length: 1662 bp        

>NTDB_id=552610 LVO07_RS14410 WP_225762356.1 3059372..3061033(-) (recN) [Escherichia coli strain E69]
ATGTTGGCACAACTGACCATCAGCAACTTTGCTATCGTTCGTGAGCTTGAGATTGATTTTCATAGCGGCATGACCGTAAT
AACTGGCGAGACCGGCGCGGGTAAATCTATTGCAATAGATGCCCTCGGTCTTTGTCTCGGTGGTCGCGCTGAAGCCGACA
TGGTGCGTACCGGCGCTGCTCGCGCTGACCTGTGCGCCCGTTTTTCTCTGAAAGATACGCCAGCGGCCCTGCGCTGGCTG
GAAGAAAACCAACTGGAAGATGGCCACGAATGCCTGCTTCGTCGTGTTATCAGTAGTGATGGCCGCTCTCGTGGTTTTAT
CAACGGTACGGCTGTTCCGCTGTCTCAGCTACGCGAACTGGGTCAGTTGCTGATTCAGATCCATGGTCAACACGCTCATC
AGTTACTCACCAAACCTGAGCATCAGAAATTCCTGCTTGATGGCTATGCCAATGAAACGTCTCTGCTCCAGGAAATGACC
GCACGTTATCAGTTGTGGCATCAAAGCTGCCGTGACCTCGCGCATCATCAACAACTCAGTCAGGAACGCGCCGCCCGTGC
TGAACTACTGCAATACCAATTAAAAGAATTAAACGAATTTAATCCGCAGCCCGGCGAGTTTGAACAAATCGACGAAGAGT
ACAAACGTCTGGCTAACAGCGGTCAATTGCTTACGACCAGCCAGAATGCATTGGCATTAATGGCCGACGGTGAAGATGCG
AACCTGCAAAGCCAGCTTTACACCGCTAAACAACTGGTCAGCGAATTGATTGGTATGGACAGCAAACTGTCCGGCGTACT
TGATATGCTGGAAGAGGCTACTATCCAGATTGCCGAAGCCAGTGACGAATTACGCCACTACTGCGATCGTCTGGATCTCG
ACCCTAACCGCTTGTTTGAACTTGAACAGCGCATCTCAAAACAGATTTCGCTGGCACGTAAACATCACGTCAGCCCTGAG
GCATTGCCACAGTATTACCAGTCGCTACTGGAAGAACAGCAGCAACTGGACGATCAAGCTGACTCGCAAGAAACACTCGC
ATTGGCGGTAACGAAACATCATCAGCAGGCGCTGGAAACGGCGCGCGCATTACACCTGCAACGCCAGCACTATGCAACTG
AGCTGGCACAGCTGATCACCGATAGTATGCAGGCGCTCTCCATGCCGCATGGCCAGTTTACGATTGATGTTAAATTTGAC
GAGCATCACCTGGGCGCTGACGGTGCTGATCGTATTGAGTTTCGGGTAACCACCAACCCAGGTCAGCCGATGCAGCCCAT
AGCCAAAGTCGCCTCCGGTGGTGAATTGTCCCGTATCGCACTGGCAATTCAGGTCATCACCGCGCGTAAAATGGAAACCC
CGGCGCTTATTTTCGATGAAGTGGATGTGGGGATTAGCGGTCCGACAGCGGCAGTTGTCGGCAAACTGCTACGTCAGCTT
GGTGAATCAACCCAGGTGATGTGTGTTACCCACCTGCCACAAGTTGCAGGATGCGGTCATCAACACTATTTTGTCAGCAA
AGAAACCGATGGCGCTATGACCGAAACGCATATGCAATCCCTGGATAAAAAGGCGCGGTTACAAGAGCTGGCGCGCCTAC
TTGGCGGCAGTGAAGTCACACGCAACACGCTGGCGAACGCGAAAGAACTACTGGCAGCGTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-511)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Neisseria gonorrhoeae strain FA1090

38.156

100

0.382
  recN Bacillus subtilis subsp. subtilis str. 168

34.843

100

0.362