Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   LRS74_RS14440 Genome accession   NZ_CP089746
Coordinates   3375261..3376658 (+) Length   465 a.a.
NCBI ID   WP_277741379.1    Uniprot ID   -
Organism   Streptomyces sp. LX-29     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3370261..3381658
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRS74_RS14430 (LRS74_14415) - 3370631..3371554 (+) 924 WP_277741376.1 hypothetical protein -
  LRS74_RS14435 (LRS74_14420) - 3372760..3375030 (-) 2271 WP_277741378.1 sigma-70 family RNA polymerase sigma factor -
  LRS74_RS14440 (LRS74_14425) radA/sms 3375261..3376658 (+) 1398 WP_277741379.1 DNA repair protein RadA Machinery gene
  LRS74_RS14445 (LRS74_14430) disA 3376931..3377989 (+) 1059 WP_186318964.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  LRS74_RS14450 (LRS74_14435) - 3378291..3379145 (-) 855 WP_277741380.1 hypothetical protein -
  LRS74_RS14455 (LRS74_14440) - 3379321..3379977 (+) 657 WP_277741381.1 phosphatase PAP2 family protein -
  LRS74_RS14460 (LRS74_14445) - 3380112..3380804 (-) 693 WP_277741382.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 49182.29 Da        Isoelectric Point: 7.7397

>NTDB_id=552415 LRS74_RS14440 WP_277741379.1 3375261..3376658(+) (radA/sms) [Streptomyces sp. LX-29]
MAARKDRPGYRCTECGWTTAKWLGRCPECHAWGTVEELGAPAVRTTAPGRVTTSALPISQVDGRQATARSTGVDELDRVL
GGGLIPGAVVLLAGEPGVGKSTLLLDVAAKAASAEHRTLYVTGEESASQVRLRADRIGALDDHLYLAAETDLSAVLGHLD
SVKPSLLILDSVQTIASPEIDGAPGGMAQVREVAGALIRASKERGMATLLVGHVTKDGAIAGPRLLEHLVDVVLHFEGDR
HARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRTEPVPGTCLTVTLEGRRPLVAEVQALTVDSQIPSPR
RTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAIGEVGLAGEV
RRVTGVQRRLAEAARLGFTHALVPTDPGKVPSGMRVQEVADIGDALRVLPRRVRREPPREDAERR

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=552415 LRS74_RS14440 WP_277741379.1 3375261..3376658(+) (radA/sms) [Streptomyces sp. LX-29]
ATGGCTGCCCGCAAAGACCGCCCCGGCTACCGCTGCACCGAATGCGGCTGGACCACCGCCAAGTGGCTCGGCCGCTGCCC
CGAGTGCCACGCCTGGGGCACCGTCGAGGAGCTCGGCGCGCCCGCCGTCCGCACCACCGCACCCGGCCGCGTCACCACCT
CCGCGCTCCCCATCAGCCAGGTCGACGGCCGCCAGGCCACGGCGCGCTCCACCGGGGTCGACGAGCTCGACCGGGTGCTG
GGCGGCGGGCTGATCCCCGGCGCGGTGGTGCTGCTGGCCGGCGAGCCCGGCGTCGGCAAGTCCACCCTGCTGCTGGACGT
GGCCGCGAAGGCGGCGAGCGCGGAGCACCGCACGCTCTACGTCACGGGCGAGGAGTCGGCGAGTCAGGTGCGGCTGCGCG
CGGACCGCATCGGCGCGCTCGACGACCACCTCTACCTCGCCGCCGAGACCGACCTGTCCGCCGTCCTCGGCCATCTGGAC
TCGGTCAAGCCCTCGCTGCTGATCCTCGACTCGGTGCAGACCATCGCCTCCCCGGAGATCGACGGCGCGCCCGGCGGCAT
GGCCCAGGTGCGGGAGGTGGCCGGGGCGTTGATCCGCGCCTCCAAGGAGCGCGGCATGGCCACGCTGCTGGTCGGCCACG
TCACCAAGGACGGCGCCATCGCCGGCCCCCGGCTGCTGGAGCACCTGGTCGACGTGGTGCTGCACTTCGAGGGCGACCGG
CACGCGCGGCTGCGCCTGGTGCGCGGGGTGAAGAACCGCTACGGGGCGACCGACGAGGTGGGCTGCTTCGAACTGCACGA
CGAGGGCATCACCGGCCTCGCCGACCCCTCCGGGCTGTTCCTCACCCGGCGCACCGAGCCGGTGCCGGGCACCTGTCTGA
CGGTGACGCTGGAGGGCCGGCGGCCGCTGGTGGCCGAGGTGCAGGCGCTCACCGTCGACTCGCAGATCCCGTCCCCCCGC
CGCACCACCTCGGGCCTGGAGACCTCCCGCGTCTCGATGATGCTGGCGGTGCTGGAGCAGCGCGGCCGGATCAGCGCGCT
GGGCAAGCGGGACATCTACAGCGCCACGGTCGGCGGGGTGAAGCTCTCCGAGCCCGCCGCCGACCTGGCCGTGGCGCTCG
CGCTGGCCAGCGCCGCCAGCGACACCCCGCTCCCCAAGAACCTGGTCGCCATCGGTGAGGTCGGGCTGGCGGGCGAGGTC
AGGCGGGTCACCGGGGTGCAGCGGCGGCTGGCCGAGGCGGCCCGGCTGGGCTTCACCCACGCGCTGGTGCCCACCGATCC
GGGCAAGGTCCCGTCGGGCATGCGCGTACAGGAAGTGGCGGACATAGGGGACGCGCTCCGGGTTCTGCCCAGGCGCGTGC
GCCGGGAGCCCCCACGGGAGGACGCCGAGCGCCGGTAG

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

AAA domain (AAA_25)

(79-218)

Subunit ChlI of Mg-chelatase (ChlI)

(365-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.142

97.204

0.419
  radA Streptococcus pneumoniae D39

43.43

96.559

0.419
  radA Streptococcus pneumoniae R6

43.43

96.559

0.419
  radA Streptococcus pneumoniae Rx1

43.43

96.559

0.419
  radA Streptococcus pneumoniae TIGR4

43.43

96.559

0.419
  radA Streptococcus mitis NCTC 12261

44.706

91.398

0.409
  radA Streptococcus mitis SK321

44.706

91.398

0.409