NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	J6B58_RS21405	Genome accession	NZ_CP072398
Coordinates	3972607..3973467 (+)	Length	286 a.a.
NCBI ID	WP_045544616.1	Uniprot ID	A0A1S2G4K1
Organism	Acinetobacter baumannii strain KSK2
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3967607..3978467

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J6B58_RS18935 (J6B58_18935)	secG	3968212..3968541 (-)	330	WP_045544614.1	preprotein translocase subunit SecG	-
J6B58_RS18940 (J6B58_18940)	tpiA	3968554..3969348 (-)	795	WP_000016939.1	triose-phosphate isomerase	-
J6B58_RS18945 (J6B58_18945)	pilB	3969639..3971351 (+)	1713	WP_045544615.1	type IV-A pilus assembly ATPase PilB	Machinery gene
J6B58_RS18950 (J6B58_18950)	pilC	3971381..3972607 (+)	1227	WP_000279216.1	type II secretion system F family protein	Machinery gene
J6B58_RS21405 (J6B58_18955)	pilD	3972607..3973467 (+)	861	WP_045544616.1	prepilin peptidase	Machinery gene
J6B58_RS18960 (J6B58_18960)	coaE	3973469..3974065 (+)	597	WP_000874127.1	dephospho-CoA kinase	-
J6B58_RS18965 (J6B58_18965)	-	3974062..3974976 (-)	915	WP_000075014.1	DMT family transporter	-
J6B58_RS18970 (J6B58_18970)	rlmB	3975012..3975761 (-)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
J6B58_RS18975 (J6B58_18975)	-	3975863..3976189 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
J6B58_RS18980 (J6B58_18980)	-	3976266..3977576 (-)	1311	WP_049590048.1	tetratricopeptide repeat protein	-

Sequence

Protein

Download Length: 286 a.a. Molecular weight: 32102.55 Da Isoelectric Point: 7.1041

                                >NTDB_id=552374 J6B58_RS21405 WP_045544616.1 3972607..3973467(+) (pilD) [Acinetobacter baumannii strain KSK2]

MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP

IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR

FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIIYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL

LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

Download Length: 861 bp

                                >NTDB_id=552374 J6B58_RS21405 WP_045544616.1 3972607..3973467(+) (pilD) [Acinetobacter baumannii strain KSK2]

ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG

TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAACAAGATTGGCAGCAAGAATGCCAAATGCTGCTCA

ATCCCGAGCAACCGATTATTGATCATGAGAAGTTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG

ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTATGTTAAGAGGAAAGTGTGGCCATTGCCAGCACCCGATTAG

TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGGTATTTGGCCCAACCATACAAA

TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC

TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG

TTATCTCATTGGTTTCCTATGTCTTTGGATTATCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG

GCGACTTTAAATTGCTTGCAGCATTAGGTGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA

CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT

TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-128)

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A1S2G4K1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Acinetobacter baumannii D1279779	98.601	100	0.986
pilD	Acinetobacter nosocomialis M2	98.252	100	0.983
pilD	Vibrio cholerae strain A1552	54.412	95.105	0.517
pilD	Vibrio campbellii strain DS40M4	52.555	95.804	0.503
pilD	Neisseria gonorrhoeae MS11	47.727	92.308	0.441

Detailed information NTG0552374