Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   J6B58_RS02840 Genome accession   NZ_CP072398
Coordinates   598803..599621 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain KSK2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 593803..604621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6B58_RS02805 (J6B58_02805) - 594385..594515 (-) 131 Protein_536 hypothetical protein -
  J6B58_RS02810 (J6B58_02810) rpoZ 594554..594832 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  J6B58_RS02815 (J6B58_02815) gmk 594905..595534 (-) 630 WP_000015937.1 guanylate kinase -
  J6B58_RS02820 (J6B58_02820) ispH 595657..596607 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  J6B58_RS02825 (J6B58_02825) fimU 596777..597250 (+) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  J6B58_RS02830 (J6B58_02830) pilV 597244..597804 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  J6B58_RS02835 (J6B58_02835) pilW 597805..598806 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  J6B58_RS02840 (J6B58_02840) pilX 598803..599621 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  J6B58_RS02845 (J6B58_02845) pilY1 599633..603487 (+) 3855 WP_000768966.1 PilC/PilY family type IV pilus protein Machinery gene
  J6B58_RS02850 (J6B58_02850) pilY2 603500..603982 (+) 483 WP_001046417.1 type IV pilin protein Machinery gene
  J6B58_RS02855 (J6B58_02855) pilE 603979..604404 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=552342 J6B58_RS02840 WP_000149374.1 598803..599621(+) (pilX) [Acinetobacter baumannii strain KSK2]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=552342 J6B58_RS02840 WP_000149374.1 598803..599621(+) (pilX) [Acinetobacter baumannii strain KSK2]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCTATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993