Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   J6B58_RS02850 Genome accession   NZ_CP072398
Coordinates   603500..603982 (+) Length   160 a.a.
NCBI ID   WP_001046417.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain KSK2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 598500..608982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6B58_RS02840 (J6B58_02840) pilX 598803..599621 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  J6B58_RS02845 (J6B58_02845) pilY1 599633..603487 (+) 3855 WP_000768966.1 PilC/PilY family type IV pilus protein Machinery gene
  J6B58_RS02850 (J6B58_02850) pilY2 603500..603982 (+) 483 WP_001046417.1 type IV pilin protein Machinery gene
  J6B58_RS02855 (J6B58_02855) pilE 603979..604404 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene
  J6B58_RS02860 (J6B58_02860) rpsP 604551..604802 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  J6B58_RS02865 (J6B58_02865) rimM 604822..605370 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  J6B58_RS02870 (J6B58_02870) trmD 605416..606156 (+) 741 WP_000464599.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  J6B58_RS02875 (J6B58_02875) rplS 606364..606732 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  J6B58_RS02880 (J6B58_02880) - 606784..607725 (-) 942 WP_085946156.1 lipase family alpha/beta hydrolase -
  J6B58_RS02885 (J6B58_02885) - 607840..608874 (-) 1035 WP_001189451.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17516.77 Da        Isoelectric Point: 8.4817

>NTDB_id=552344 J6B58_RS02850 WP_001046417.1 603500..603982(+) (pilY2) [Acinetobacter baumannii strain KSK2]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNAAANGQTWVIKATTTDSRNFNFIAKNSGLRCQSLTATAVDNDCGGTVTCNVCETNSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=552344 J6B58_RS02850 WP_001046417.1 603500..603982(+) (pilY2) [Acinetobacter baumannii strain KSK2]
ATGAATAAGTACTCTATTCTACGGTTCAATCAAGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTGGAACAGCATAAATCAAGAAATTTTACTTATAGGGGGTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAGATTACTGATGATACGACGACAGGAAATTTATTGACGAATGCTGCTGCAAATGGACAAAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAACTTTAATTTTATTGCTAAGAATTCAGGTTTGCGTTGTCAAAGTT
TAACAGCTACGGCTGTTGATAATGACTGTGGTGGAACAGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

98.125

100

0.981
  comE Acinetobacter baylyi ADP1

41.279

100

0.444