Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   LRP95_RS02045 Genome accession   NZ_CP089745
Coordinates   439062..439427 (+) Length   121 a.a.
NCBI ID   WP_003084587.1    Uniprot ID   A0A0H2ZKW2
Organism   Pseudomonas aeruginosa strain Pa608     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 434062..444427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRP95_RS02015 pyrR 434684..435196 (-) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  LRP95_RS02020 ruvX 435308..435742 (-) 435 WP_003121753.1 Holliday junction resolvase RuvX -
  LRP95_RS02025 - 435742..436311 (-) 570 WP_003100947.1 YqgE/AlgH family protein -
  LRP95_RS02030 - 436360..437253 (-) 894 WP_003160914.1 energy transducer TonB -
  LRP95_RS02035 gshB 437400..438353 (-) 954 WP_014602389.1 glutathione synthase -
  LRP95_RS02040 pilG 438608..439015 (+) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  LRP95_RS02045 pilH 439062..439427 (+) 366 WP_003084587.1 twitching motility response regulator PilH Machinery gene
  LRP95_RS02050 - 439478..440014 (+) 537 WP_003084590.1 chemotaxis protein CheW -
  LRP95_RS02055 pilJ 440099..442147 (+) 2049 WP_003084592.1 chemotaxis chemoreceptor PilJ -
  LRP95_RS02060 pilK 442208..443083 (+) 876 WP_003100938.1 type 4 fimbrial methyltransferase PilK -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13273.30 Da        Isoelectric Point: 5.1961

>NTDB_id=552291 LRP95_RS02045 WP_003084587.1 439062..439427(+) (pilH) [Pseudomonas aeruginosa strain Pa608]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLAG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=552291 LRP95_RS02045 WP_003084587.1 439062..439427(+) (pilH) [Pseudomonas aeruginosa strain Pa608]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCTCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGCGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZKW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364