Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   LRP95_RS00175 Genome accession   NZ_CP089745
Coordinates   35779..36405 (-) Length   208 a.a.
NCBI ID   WP_232683439.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain Pa608     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 30779..41405
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LRP95_RS00150 - 31561..32484 (-) 924 WP_003115797.1 choline ABC transporter substrate-binding protein -
  LRP95_RS00155 betC 32501..34012 (-) 1512 WP_014602329.1 choline-sulfatase -
  LRP95_RS00160 - 34125..35039 (+) 915 WP_003122286.1 choline sulfate utilization transcriptional regulator -
  LRP95_RS00165 - 35050..35427 (+) 378 WP_003114635.1 DOPA 4,5-dioxygenase family protein -
  LRP95_RS00170 - 35406..35771 (-) 366 WP_003097330.1 Hpt domain-containing protein -
  LRP95_RS00175 letA 35779..36405 (-) 627 WP_232683439.1 response regulator transcription factor Regulator
  LRP95_RS00180 trpA 36591..37397 (-) 807 WP_009875638.1 tryptophan synthase subunit alpha -
  LRP95_RS00185 trpB 37394..38602 (-) 1209 WP_003097340.1 tryptophan synthase subunit beta -
  LRP95_RS00190 trpI 38706..39593 (+) 888 WP_012613425.1 trpBA operon transcriptional activator TrpI -
  LRP95_RS00195 - 39694..39909 (+) 216 WP_003097345.1 dodecin -
  LRP95_RS00200 - 40093..40320 (+) 228 WP_003097347.1 DUF1161 domain-containing protein -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 22987.84 Da        Isoelectric Point: 10.2635

>NTDB_id=552286 LRP95_RS00175 WP_232683439.1 35779..36405(-) (letA) [Pseudomonas aeruginosa strain Pa608]
MSKVLIVDDHPAIRLAVRLLFERDGFTIVGEADNGAEALQVARKKSPDLAILDIGIPKKIDGLEVIARLKSLKLDTKVLV
LTRQNPAQFAPRCLQAGAMGFVSKRENLSELLLAAKAVLAGYIHFPTGALRSINQQSRDNEARMLESLSDREMTVLQYLA
NGNTNKAIAQQLFLSEKTVSTYKSRIMLKLNAHSLAGLIDFARRHELI

Nucleotide


Download         Length: 627 bp        

>NTDB_id=552286 LRP95_RS00175 WP_232683439.1 35779..36405(-) (letA) [Pseudomonas aeruginosa strain Pa608]
ATGAGTAAGGTGCTGATCGTCGATGATCATCCCGCTATCCGCCTGGCCGTGCGCTTGCTGTTCGAGCGCGACGGTTTCAC
CATCGTCGGCGAGGCCGACAACGGTGCCGAAGCCCTGCAGGTAGCCCGCAAGAAGTCTCCCGACCTGGCCATCCTGGACA
TCGGCATCCCCAAGAAGATCGACGGTCTCGAAGTGATAGCCCGCCTGAAGTCCCTGAAGCTGGACACCAAGGTCCTGGTC
CTGACCCGGCAGAATCCGGCGCAGTTCGCCCCGCGCTGCCTGCAGGCCGGCGCCATGGGCTTCGTCAGCAAAAGGGAAAA
CCTCTCCGAGCTGCTGCTCGCCGCCAAGGCCGTGCTGGCCGGCTACATCCACTTCCCCACCGGGGCGTTGCGCAGCATCA
ACCAGCAGAGCCGCGACAACGAGGCCCGCATGCTGGAAAGCCTTTCCGACCGCGAGATGACCGTGCTGCAGTACCTGGCC
AACGGCAACACCAACAAGGCCATCGCCCAGCAGCTGTTCCTCAGCGAGAAAACCGTGAGCACCTACAAGTCACGCATCAT
GCTGAAACTCAACGCCCATTCCCTGGCCGGCCTGATCGATTTCGCCCGCCGCCACGAGCTGATCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(146-202)

Response regulator receiver domain (Response_reg)

(4-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

35.211

100

0.361
  letA Legionella pneumophila strain ERS1305867

35.211

100

0.361