Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   A7A1_RS04945 Genome accession   NC_019896
Coordinates   973541..974185 (+) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis str. BSP1     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 968541..979185
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7A1_RS04920 (A7A1_2285) - 968928..969296 (-) 369 WP_014477834.1 hypothetical protein -
  A7A1_RS21470 - 969410..969535 (-) 126 WP_003228793.1 hypothetical protein -
  A7A1_RS04925 (A7A1_2284) degQ 969757..969897 (+) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  A7A1_RS04930 (A7A1_2283) comQ 970082..970981 (+) 900 WP_015251332.1 ComX modifying isoprenyl transferase ComQ Regulator
  A7A1_RS04935 (A7A1_2282) comX 970969..971136 (+) 168 WP_003242801.1 competence pheromone ComX Regulator
  A7A1_RS04940 (A7A1_2281) comP 971151..973460 (+) 2310 WP_015251333.1 two-component system sensor histidine kinase ComP Regulator
  A7A1_RS04945 (A7A1_2280) comA 973541..974185 (+) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  A7A1_RS04950 (A7A1_2279) yuxO 974204..974584 (+) 381 WP_017695528.1 hotdog fold thioesterase -
  A7A1_RS04955 (A7A1_2278) mnhG 974625..974999 (-) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  A7A1_RS04960 (A7A1_2277) mrpF 974983..975267 (-) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  A7A1_RS04965 (A7A1_2276) mrpE 975267..975743 (-) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  A7A1_RS04970 (A7A1_2275) mrpD 975749..977230 (-) 1482 WP_044052469.1 Na+/H+ antiporter subunit D -
  A7A1_RS04975 (A7A1_2274) mrpC 977223..977564 (-) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  A7A1_RS04980 (A7A1_2273) mrpB 977564..977995 (-) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=55219 A7A1_RS04945 WP_003220716.1 973541..974185(+) (comA) [Bacillus subtilis subsp. subtilis str. BSP1]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=55219 A7A1_RS04945 WP_003220716.1 973541..974185(+) (comA) [Bacillus subtilis subsp. subtilis str. BSP1]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGTGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment