Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   LUU82_RS10140 Genome accession   NZ_CP089586
Coordinates   2035699..2036811 (-) Length   370 a.a.
NCBI ID   WP_232652271.1    Uniprot ID   -
Organism   Staphylococcus aureus strain E1185_IV_ST12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2030699..2041811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUU82_RS10130 (LUU82_10130) gyrA 2031049..2033718 (-) 2670 WP_000819096.1 DNA gyrase subunit A -
  LUU82_RS10135 (LUU82_10135) gyrB 2033755..2035689 (-) 1935 WP_000255578.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  LUU82_RS10140 (LUU82_10140) recF 2035699..2036811 (-) 1113 WP_232652271.1 DNA replication/repair protein RecF Machinery gene
  LUU82_RS10145 (LUU82_10145) yaaA 2036808..2037053 (-) 246 WP_001789359.1 S4 domain-containing protein YaaA -
  LUU82_RS10150 (LUU82_10150) dnaN 2037434..2038567 (-) 1134 WP_000970371.1 DNA polymerase III subunit beta -
  LUU82_RS10155 (LUU82_10155) dnaA 2038845..2040206 (-) 1362 WP_001290433.1 chromosomal replication initiator protein DnaA -
  LUU82_RS10160 (LUU82_10160) rpmH 2040937..2041074 (+) 138 WP_000240855.1 50S ribosomal protein L34 -
  LUU82_RS10165 (LUU82_10165) rnpA 2041195..2041548 (+) 354 WP_001789343.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42449.45 Da        Isoelectric Point: 6.4362

>NTDB_id=552113 LUU82_RS10140 WP_232652271.1 2035699..2036811(-) (recF) [Staphylococcus aureus strain E1185_IV_ST12]
MKLNTLQLENYRNYDEVTLKCHPDVNILIGENAQGKTNLLESIYTLALAKSHRTSNDKELIRFNADYAKIEGELSYRHGT
MPLTMFITKKGKQVKVNHLEQSRLTQYIGHINVVLFAPEDLNIVKGSPQIRRRFIDMELGQISAVYLNDLAQYQRILKQK
NNYLKQLQLGQKKDLTMLEVLNQQFAEYAMKVTDKRAHFIQELESLAKPIHAGITNDKEALSLNYLPSLKFDYAQNEAAR
FEEIMSILSDNMQREKERGISLFGPHRDDISFDVNGMDAQTYGSQGQQRTTALSIKLAEIELMNIEVGEYPILLLDDVLS
ELDDSRQTHLLSTIQHKVQTFVTTTSVDGIDHEIMNNAKLYRINQGEIIK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=552113 LUU82_RS10140 WP_232652271.1 2035699..2036811(-) (recF) [Staphylococcus aureus strain E1185_IV_ST12]
ATGAAGTTAAATACACTCCAATTAGAAAATTATCGTAACTATGATGAGGTTACGTTGAAATGTCATCCTGACGTGAATAT
CCTCATTGGAGAAAATGCACAAGGAAAGACAAATTTACTTGAATCAATTTATACCTTAGCTTTAGCAAAAAGTCATAGAA
CGAGTAATGATAAGGAACTCATACGTTTTAATGCTGATTATGCTAAAATAGAAGGTGAGCTTAGTTATAGACACGGCACG
ATGCCATTAACAATGTTTATAACTAAAAAAGGTAAACAAGTCAAAGTGAATCACTTAGAGCAAAGTCGTCTAACTCAATA
TATTGGACACATCAATGTGGTTCTATTTGCGCCAGAAGATTTGAATATTGTAAAAGGCTCTCCTCAAATAAGACGACGCT
TTATAGATATGGAGTTGGGCCAAATTTCTGCTGTTTACTTAAATGATTTAGCTCAATACCAACGTATTTTAAAGCAAAAG
AATAATTACTTAAAGCAGTTACAATTAGGCCAAAAAAAGGACTTAACAATGTTGGAAGTATTAAATCAGCAGTTTGCTGA
ATATGCAATGAAAGTAACTGATAAACGTGCACATTTTATTCAAGAGCTAGAGTCGTTAGCTAAACCGATTCATGCTGGTA
TCACAAATGATAAAGAAGCGTTGTCGCTGAATTATTTACCTAGTCTTAAATTTGATTATGCTCAAAATGAAGCGGCACGA
TTTGAAGAAATTATGTCTATTCTTAGCGATAATATGCAAAGAGAAAAAGAACGAGGCATTAGCTTATTCGGACCACATCG
AGATGATATAAGTTTTGATGTGAATGGCATGGATGCTCAAACATATGGTTCTCAAGGACAGCAACGTACAACGGCTTTGT
CCATTAAATTAGCTGAAATTGAGTTAATGAATATCGAAGTTGGGGAATATCCCATCTTATTATTAGACGATGTACTCAGT
GAATTAGATGATTCGCGTCAAACGCATTTATTAAGTACGATTCAGCATAAAGTACAAACATTTGTCACTACGACATCTGT
AGATGGTATTGATCATGAAATCATGAATAACGCTAAATTGTATCGTATTAATCAAGGTGAAATTATAAAGTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-347)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

58.378

100

0.584
  recF Streptococcus pneumoniae R6

48.794

100

0.492