Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   J4854_RS08625 Genome accession   NZ_CP072329
Coordinates   1731833..1732330 (-) Length   165 a.a.
NCBI ID   WP_200772456.1    Uniprot ID   -
Organism   Streptococcus lactarius strain CCUG 66490     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1726833..1737330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4854_RS08610 (J4854_08610) - 1729680..1730624 (+) 945 WP_187540063.1 magnesium transporter CorA family protein -
  J4854_RS08615 (J4854_08615) - 1730652..1731329 (+) 678 WP_187540061.1 DUF1129 domain-containing protein -
  J4854_RS08620 (J4854_08620) rpsR 1731552..1731791 (-) 240 WP_000068664.1 30S ribosomal protein S18 -
  J4854_RS08625 (J4854_08625) ssbA 1731833..1732330 (-) 498 WP_200772456.1 single-stranded DNA-binding protein Machinery gene
  J4854_RS08630 (J4854_08630) rpsF 1732351..1732641 (-) 291 WP_003005040.1 30S ribosomal protein S6 -
  J4854_RS08635 (J4854_08635) - 1732944..1733996 (+) 1053 WP_200772455.1 bifunctional glycosyltransferase family 2/GtrA family protein -
  J4854_RS08640 (J4854_08640) - 1733983..1734885 (+) 903 WP_200772454.1 phosphodiester glycosidase family protein -
  J4854_RS08645 (J4854_08645) - 1734866..1735273 (+) 408 WP_200772511.1 hypothetical protein -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 17905.63 Da        Isoelectric Point: 4.9371

>NTDB_id=552065 J4854_RS08625 WP_200772456.1 1731833..1732330(-) (ssbA) [Streptococcus lactarius strain CCUG 66490]
MINNVVLVGRLTRDAELRYTSSNQAVATFSLAVNRNFKSQNGERETDFINCVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADSFQLLESRAAREGHAAGGYSSGNGGFAGNAAPSFGGSEPSNAAPNFGREENPFGANPMDISD
DDLPF

Nucleotide


Download         Length: 498 bp        

>NTDB_id=552065 J4854_RS08625 WP_200772456.1 1731833..1732330(-) (ssbA) [Streptococcus lactarius strain CCUG 66490]
ATGATTAACAATGTTGTACTTGTCGGTCGTTTGACCCGTGATGCTGAACTTCGCTACACTTCTAGTAACCAAGCAGTTGC
TACTTTCAGCCTAGCTGTAAACCGCAACTTCAAGAGTCAAAATGGAGAACGCGAAACTGATTTCATCAACTGTGTGATCT
GGCGTCAGCAAGCAGAAAACTTAGCCAACTGGGCTAAGAAAGGTGCTTTGATTGGGATTACCGGTCGCATTCAAACACGT
AATTACGAAAACCAGCAAGGTCAACGTGTTTATGTCACTGAAGTCGTAGCAGACAGCTTCCAACTATTGGAAAGCCGTGC
AGCACGCGAAGGGCATGCAGCTGGTGGCTATTCATCAGGCAACGGTGGTTTTGCTGGAAATGCAGCCCCAAGCTTTGGTG
GATCAGAACCAAGCAATGCAGCACCAAACTTTGGTCGTGAGGAAAATCCATTTGGAGCCAATCCAATGGACATCTCAGAT
GACGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.286

100

0.618
  ssb Latilactobacillus sakei subsp. sakei 23K

58.824

100

0.606