Detailed information NTG0552054

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: J4854_RS06080
• Genome accession: NZ_CP072329
• Coordinates: 1188372..1189604 (-)
• Length: 410 a.a.
• NCBI ID: WP_187539897.1
• Uniprot ID: -
• Organism: Streptococcus lactarius strain CCUG 66490
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 1183372..1194604

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J4854_RS06045 (J4854_06045)	-	1183442..1183894 (-)	453	WP_200773323.1	lipoprotein	-
J4854_RS06050 (J4854_06050)	-	1184091..1184534 (-)	444	WP_200773324.1	hypothetical protein	-
J4854_RS06055 (J4854_06055)	rplL	1184780..1185148 (-)	369	WP_187539888.1	50S ribosomal protein L7/L12	-
J4854_RS06060 (J4854_06060)	rplJ	1185216..1185719 (-)	504	WP_187539890.1	50S ribosomal protein L10	-
J4854_RS06065 (J4854_06065)	-	1185951..1186748 (-)	798	WP_200773325.1	formate/nitrite transporter family protein	-
J4854_RS06070 (J4854_06070)	-	1186908..1187609 (-)	702	WP_200773326.1	glucosaminidase domain-containing protein	-
J4854_RS06075 (J4854_06075)	yihA	1187758..1188360 (-)	603	WP_200773327.1	ribosome biogenesis GTP-binding protein YihA/YsxC	-
J4854_RS06080 (J4854_06080)	clpX	1188372..1189604 (-)	1233	WP_187539897.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
J4854_RS06085 (J4854_06085)	-	1189814..1190323 (-)	510	WP_200773328.1	dihydrofolate reductase	-

Sequence

Protein

• Length: 410 a.a.
• Molecular weight: 45636.13 Da
• Isoelectric Point: 4.3911

>NTDB_id=552054 J4854_RS06080 WP_187539897.1 1188372..1189604(-) (clpX) [Streptococcus lactarius strain CCUG 66490]
MPTNQNSDMMVYCSFCGKSQDEVQKIIAGNNAFICNECVELAQEIIREELAEEVLADLSEVPKPIELLQILNHYVIGQDR
AKRALAVAVYNHYKRINYHDTREDDTDVELQKSNILMIGPTGSGKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQAADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKIIGFGKNNKAIDEASSYMQEIVAEDIQKFGIIPELIGRLPVFAALEQLTVDDLVR
ILKEPRNALVKQYQTLLSYDNVELEFDDEALQEIANKAIERKTGARGLRSIIEETMMDVMFEVPSQEDVKLVRITKEAVD
GTEKPILETA

Nucleotide

• Length: 1233 bp

>NTDB_id=552054 J4854_RS06080 WP_187539897.1 1188372..1189604(-) (clpX) [Streptococcus lactarius strain CCUG 66490]
ATGCCAACCAATCAAAATTCGGATATGATGGTCTACTGTTCATTTTGCGGTAAGAGTCAAGATGAAGTCCAAAAAATCAT
CGCTGGGAACAATGCCTTCATTTGTAATGAATGCGTCGAGTTAGCCCAAGAAATCATTCGTGAAGAACTCGCTGAAGAAG
TACTTGCAGATCTTAGCGAAGTTCCAAAACCAATCGAATTGCTTCAAATTTTGAACCACTATGTCATCGGTCAAGACCGT
GCCAAACGTGCTCTTGCCGTAGCCGTTTACAATCACTACAAACGGATCAATTACCACGATACACGTGAAGATGATACTGA
TGTAGAATTGCAAAAATCAAACATCCTCATGATCGGCCCAACTGGTTCAGGTAAAACCTTCTTAGCCCAAACCTTGGCAC
GTAGCTTGAATGTTCCATTCGCCATTGCTGATGCGACTGCCTTGACTGAAGCTGGTTATGTAGGAGAAGACGTTGAAAAT
ATTCTCTTAAAGCTCCTTCAGGCAGCGGATTTCAATATTGAACGTGCAGAACGTGGGATCATCTATGTGGATGAAATTGA
TAAAATCGCTAAGAAAAGCGAAAATGTCTCGATCACTCGTGATGTTTCCGGTGAAGGTGTCCAACAAGCTCTCTTGAAGA
TCATTGAAGGGACAGTTGCTAGCGTTCCCCCTCAAGGTGGTCGCAAGCACCCTCAACAAGAAATGATCCAAGTGGATACG
AAAAATATTCTCTTCATCGTTGGTGGAGCATTTGACGGAATCGAAGAAATTGTTAAGCAACGCTTAGGTGAGAAGATCAT
CGGTTTTGGTAAAAATAACAAGGCTATCGATGAAGCAAGCTCTTATATGCAAGAAATCGTGGCAGAAGATATTCAAAAAT
TTGGGATTATCCCTGAATTGATTGGACGCCTTCCAGTCTTTGCGGCTCTTGAGCAATTGACTGTTGATGACCTCGTCCGC
ATCCTCAAAGAGCCACGCAATGCCTTGGTAAAACAATACCAAACCTTGCTTTCTTACGATAATGTGGAATTGGAATTTGA
TGATGAAGCACTTCAAGAGATTGCTAATAAAGCCATCGAAAGAAAGACAGGAGCTCGTGGACTTCGCTCCATTATCGAAG
AAACCATGATGGATGTCATGTTTGAAGTTCCAAGTCAAGAAGATGTCAAATTGGTTCGCATCACCAAAGAAGCCGTCGAT
GGAACGGAAAAACCAATTCTTGAAACAGCCTAG

Domains

Predicted by InterproScan.

• ClpX C4-type zinc finger (zf-C4_ClpX) (12-48)

• AAA domain (Cdc48 subfamily) (AAA_2) (111-306)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (313-390)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	86.098	100	0.861
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	57.711	98.049	0.566