Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   J4854_RS00015 Genome accession   NZ_CP072329
Coordinates   1497..2258 (+) Length   253 a.a.
NCBI ID   WP_187538550.1    Uniprot ID   -
Organism   Streptococcus lactarius strain CCUG 66490     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1..7258
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4854_RS00010 (J4854_00010) htrA 244..1425 (+) 1182 WP_200772344.1 S1C family serine protease Regulator
  J4854_RS00015 (J4854_00015) spo0J 1497..2258 (+) 762 WP_187538550.1 ParB/RepB/Spo0J family partition protein Regulator
  J4854_RS00020 (J4854_00020) dnaA 2524..3882 (+) 1359 WP_200772343.1 chromosomal replication initiator protein DnaA -
  J4854_RS00025 (J4854_00025) dnaN 4042..5178 (+) 1137 WP_200772342.1 DNA polymerase III subunit beta -
  J4854_RS00030 (J4854_00030) - 5190..5381 (+) 192 WP_200772341.1 DUF951 domain-containing protein -
  J4854_RS00035 (J4854_00035) - 5417..5914 (-) 498 WP_200772340.1 DUF1307 domain-containing protein -
  J4854_RS00040 (J4854_00040) ychF 6093..7208 (+) 1116 WP_200772339.1 redox-regulated ATPase YchF -

Sequence

Protein


Download         Length: 253 a.a.        Molecular weight: 29297.94 Da        Isoelectric Point: 9.6330

>NTDB_id=552012 J4854_RS00015 WP_187538550.1 1497..2258(+) (spo0J) [Streptococcus lactarius strain CCUG 66490]
MEKFEKLAIKDIRTNPFQPRKVFDKEKLEELAHSIKENGLIQPIVVRKSPIIGFELLAGERRFRASKIAGLEVIPAIIKE
LTDQEMMQQAIIENLQREDLNPIEEALSYQKLVENGYKHDQIAQFMGKSRPYISNMLRLLQLTPAIQEAVIQNDISSAHA
RVLVPLDEKEQNYWLEKIKQEHLNVRILENKISSKRKLKNQPAKESFLTEEEKNLKKLLGTEVKIHSSASNKGSIQIFFS
NLDEYQRIINSLK

Nucleotide


Download         Length: 762 bp        

>NTDB_id=552012 J4854_RS00015 WP_187538550.1 1497..2258(+) (spo0J) [Streptococcus lactarius strain CCUG 66490]
ATGGAAAAATTTGAAAAACTAGCAATAAAAGATATTCGAACCAATCCTTTTCAACCAAGAAAAGTATTTGATAAAGAAAA
ATTAGAAGAACTGGCCCACTCCATTAAAGAAAATGGATTAATCCAACCCATTGTTGTCAGAAAATCTCCAATTATCGGTT
TTGAACTGCTTGCAGGTGAGAGACGGTTTAGAGCTTCAAAAATAGCGGGATTAGAGGTTATTCCTGCTATCATAAAAGAA
TTAACTGATCAAGAAATGATGCAACAAGCCATTATTGAAAATTTACAGAGAGAAGACCTTAATCCCATTGAAGAAGCTCT
ATCTTATCAGAAGTTAGTTGAAAATGGTTATAAGCATGATCAAATTGCTCAATTTATGGGAAAATCTAGACCTTATATTA
GCAATATGCTTCGCTTATTACAACTAACACCCGCTATTCAAGAAGCTGTTATTCAAAATGATATTTCTTCAGCTCACGCG
CGTGTTCTCGTTCCTCTTGATGAAAAAGAGCAAAATTATTGGCTTGAAAAAATAAAACAAGAGCACTTAAATGTTCGGAT
ATTAGAAAATAAGATCAGCTCTAAAAGAAAGTTAAAAAATCAACCAGCAAAAGAATCTTTTCTAACTGAAGAAGAAAAGA
ACTTAAAGAAATTACTGGGGACAGAAGTTAAAATTCACTCCTCAGCCTCAAATAAGGGAAGTATCCAAATTTTCTTTTCA
AATCTTGATGAATACCAACGAATTATCAACAGTCTGAAATAA

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(6-94)

HTH domain found in ParB protein (HTH_ParB)

(144-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

49.407

100

0.494