Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   LUV23_RS25650 Genome accession   NZ_CP089536
Coordinates   6286262..6287686 (-) Length   474 a.a.
NCBI ID   WP_069873511.1    Uniprot ID   -
Organism   Streptomyces sp. HNM0561     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6281262..6292686
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUV23_RS25635 (LUV23_25635) - 6281596..6282522 (-) 927 WP_069873517.1 A/G-specific adenine glycosylase -
  LUV23_RS25640 (LUV23_25640) - 6282815..6283693 (+) 879 WP_206333002.1 hypothetical protein -
  LUV23_RS25645 (LUV23_25645) disA 6284677..6285735 (-) 1059 WP_069873662.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  LUV23_RS25650 (LUV23_25650) radA/sms 6286262..6287686 (-) 1425 WP_069873511.1 DNA repair protein RadA Machinery gene
  LUV23_RS25655 (LUV23_25655) - 6287887..6289596 (+) 1710 WP_069873509.1 sigma-70 family RNA polymerase sigma factor -
  LUV23_RS25660 (LUV23_25660) - 6289721..6290647 (-) 927 WP_206333003.1 hypothetical protein -
  LUV23_RS25665 (LUV23_25665) - 6290779..6291708 (+) 930 WP_069873505.1 Ppx/GppA phosphatase family protein -
  LUV23_RS25670 (LUV23_25670) - 6291805..6292650 (+) 846 WP_069873661.1 sugar phosphate isomerase/epimerase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 49985.94 Da        Isoelectric Point: 7.4052

>NTDB_id=551996 LUV23_RS25650 WP_069873511.1 6286262..6287686(-) (radA/sms) [Streptomyces sp. HNM0561]
MAARSSSRSSAKDRPSYRCTECGWTTAKWLGRCPECQAWGTVEEYGTPAVRTTTPGRVTSAALPIGQVDGRQATARTTGV
DELDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASEERRTLYITGEESASQVRLRADRIGALSDHLYLAAETDLS
AVLGHLDSVKPSLLVLDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVV
LHFEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQALTVD
SQIPSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAVALALASAASDTPLPKNLVAVGE
VGLAGEVRRVTGVQRRLSEAARLGFTHALVPGDPGRIPDGMRVLEVADIGDALRVLPRRRERGEKARVEAEGNG

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=551996 LUV23_RS25650 WP_069873511.1 6286262..6287686(-) (radA/sms) [Streptomyces sp. HNM0561]
ATGGCTGCCCGTAGCTCCTCCCGCTCATCCGCCAAGGACCGCCCCTCCTACCGCTGTACGGAGTGCGGCTGGACCACCGC
CAAGTGGCTCGGCCGCTGCCCGGAATGCCAGGCGTGGGGCACGGTCGAGGAGTACGGCACGCCCGCGGTGCGGACCACCA
CGCCCGGCCGGGTCACCTCCGCCGCCCTGCCCATCGGCCAGGTGGACGGCCGTCAGGCCACCGCGCGGACCACGGGCGTG
GACGAGCTCGACCGGGTGCTCGGCGGCGGGCTGGTCCCCGGCGCCGTCGTGCTGCTCGCCGGGGAGCCCGGGGTCGGCAA
GTCCACCCTGCTGCTGGACGTGGCGGCCAAGGCCGCCTCCGAGGAGCGCCGCACGCTCTACATCACCGGTGAGGAGTCGG
CGAGCCAGGTGCGGCTGCGCGCCGACCGCATCGGCGCGCTCAGCGACCATCTCTACCTGGCCGCCGAGACCGACCTCTCC
GCGGTCCTCGGCCACCTCGACTCGGTCAAGCCCTCGCTGCTGGTCCTGGACTCGGTGCAGACCGTCGCCTCGCCCGAGAT
CGACGGCGCGCCGGGCGGGATGGCGCAGGTGCGCGAGGTGGCCGGGGCGCTCATCCGCGCGTCCAAGGAGCGCGGGATGT
CCACCCTGCTGGTGGGCCATGTCACCAAGGACGGCGCCATCGCGGGGCCCCGGCTGCTGGAGCATCTGGTCGATGTCGTC
CTGCACTTCGAGGGCGACCGGCACGCCCGGCTGCGCCTGGTCCGCGGGGTGAAGAACCGCTACGGGGCGACGGACGAGGT
CGGCTGCTTCGAGCTGCACGACGAGGGCATCACCGGGCTCGCCGACCCCTCCGGGCTGTTCCTCACCCGCCGTGACGAGC
CGGTGCCGGGCACCTGTCTGACGGTCACCCTGGAGGGCCGCCGGCCGCTGGTGGCCGAGGTGCAGGCGCTCACCGTTGAC
TCCCAGATCCCCTCCCCCCGCCGCACCACCTCCGGTCTGGAGACCTCCCGGGTCTCGATGATGCTCGCCGTGCTGGAGCA
GCGCGGCCGGATCAGCGCGCTGGGCAAACGGGACATCTACAGCGCCACGGTGGGCGGGGTGAAGCTGTCCGAGCCCGCCG
CGGACCTCGCGGTGGCGCTCGCGCTGGCCAGCGCCGCCAGTGACACCCCGCTGCCCAAGAACCTGGTGGCGGTGGGCGAG
GTGGGGCTCGCGGGCGAGGTCCGGCGGGTCACCGGCGTACAGCGGCGGCTGTCGGAGGCGGCCCGGCTCGGCTTCACCCA
CGCCCTGGTGCCGGGCGATCCGGGCCGGATACCGGACGGGATGCGGGTGCTGGAGGTCGCGGACATCGGGGACGCGCTGC
GGGTGCTGCCGCGGCGGCGGGAGCGTGGCGAGAAGGCGCGGGTGGAAGCGGAGGGCAATGGCTGA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(372-431)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(17-44)

AAA domain (AAA_25)

(86-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.488

95.57

0.416
  radA Streptococcus mitis NCTC 12261

42.731

95.781

0.409
  radA Streptococcus pneumoniae R6

42.794

95.148

0.407
  radA Streptococcus pneumoniae Rx1

42.794

95.148

0.407
  radA Streptococcus pneumoniae TIGR4

42.794

95.148

0.407
  radA Streptococcus pneumoniae D39

42.794

95.148

0.407
  radA Streptococcus mitis SK321

44.028

90.084

0.397