Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   J6B42_RS17075 Genome accession   NZ_CP072311
Coordinates   3433936..3434625 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain SC60     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3428936..3439625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6B42_RS17040 (J6B42_16980) - 3429134..3429616 (-) 483 WP_003151394.1 flagellar protein FlgN -
  J6B42_RS17045 (J6B42_16985) flgM 3429631..3429897 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  J6B42_RS17050 (J6B42_16990) - 3429967..3430386 (-) 420 WP_003151392.1 TIGR03826 family flagellar region protein -
  J6B42_RS17055 (J6B42_16995) comFC 3430460..3431149 (-) 690 WP_196769287.1 phosphoribosyltransferase family protein Machinery gene
  J6B42_RS17060 (J6B42_17000) - 3431155..3431439 (-) 285 WP_003151389.1 competence protein ComFB -
  J6B42_RS17065 (J6B42_17005) comFA 3431497..3432882 (-) 1386 WP_025853539.1 DEAD/DEAH box helicase Machinery gene
  J6B42_RS17070 (J6B42_17010) - 3432990..3433838 (-) 849 WP_003151387.1 DegV family protein -
  J6B42_RS17075 (J6B42_17015) degU 3433936..3434625 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  J6B42_RS17080 (J6B42_17020) degS 3434702..3435865 (-) 1164 WP_248872589.1 two-component sensor histidine kinase DegS Regulator
  J6B42_RS17085 (J6B42_17025) - 3436088..3436735 (+) 648 WP_003151384.1 YigZ family protein -
  J6B42_RS17090 (J6B42_17030) - 3436740..3437954 (+) 1215 WP_003151383.1 LCP family protein -
  J6B42_RS17095 (J6B42_17035) - 3438044..3439120 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=551925 J6B42_RS17075 WP_003219701.1 3433936..3434625(-) (degU) [Bacillus velezensis strain SC60]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=551925 J6B42_RS17075 WP_003219701.1 3433936..3434625(-) (degU) [Bacillus velezensis strain SC60]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTATCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1