Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   J6B42_RS01750 Genome accession   NZ_CP072311
Coordinates   321821..322219 (-) Length   132 a.a.
NCBI ID   WP_014304317.1    Uniprot ID   -
Organism   Bacillus velezensis strain SC60     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 316821..327219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6B42_RS01715 - 317820..317981 (-) 162 Protein_297 hypothetical protein -
  J6B42_RS01720 (J6B42_01710) - 318098..319300 (+) 1203 WP_025853783.1 GTP-binding protein -
  J6B42_RS01725 (J6B42_01715) - 319365..320501 (+) 1137 WP_003156594.1 zinc-dependent alcohol dehydrogenase -
  J6B42_RS01730 (J6B42_01720) - 320516..320950 (+) 435 WP_003156592.1 RDD family protein -
  J6B42_RS01735 (J6B42_01725) - 321023..321343 (+) 321 WP_015388719.1 YckD family protein -
  J6B42_RS01740 (J6B42_01730) - 321447..321563 (+) 117 WP_015388718.1 family 1 glycosylhydrolase -
  J6B42_RS01745 (J6B42_01735) - 321562..321780 (+) 219 Protein_303 family 1 glycosylhydrolase -
  J6B42_RS01750 (J6B42_01740) nin/comJ 321821..322219 (-) 399 WP_014304317.1 competence protein ComJ Regulator
  J6B42_RS01755 (J6B42_01745) nucA/comI 322241..322678 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  J6B42_RS01760 (J6B42_01750) hxlB 323037..323594 (-) 558 WP_014304318.1 6-phospho-3-hexuloisomerase -
  J6B42_RS01765 (J6B42_01755) hxlA 323591..324226 (-) 636 WP_014304319.1 3-hexulose-6-phosphate synthase -
  J6B42_RS01770 (J6B42_01760) - 324458..324820 (+) 363 WP_014304320.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 15049.01 Da        Isoelectric Point: 4.6564

>NTDB_id=551864 J6B42_RS01750 WP_014304317.1 321821..322219(-) (nin/comJ) [Bacillus velezensis strain SC60]
MNKSWKPQELAISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVFRLNTSEPVLSYEKKATVPF
EAVKDGIEIESVMSKRLFFNIPKGRYSLTCYSVPAEISDLHADTYIIDADAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=551864 J6B42_RS01750 WP_014304317.1 321821..322219(-) (nin/comJ) [Bacillus velezensis strain SC60]
TTGAATAAATCATGGAAACCGCAAGAACTGGCCATTTCGTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATATGCGGAAGCTGACGGAGCTGTTTCATTCGAAGCAAGGAGAA
ATACGAGGGCATTTATCGTCTTCAGGCTTAACACAAGTGAACCGGTACTATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCAAAGCGGCTTTTCTTTAATATTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCGGATACGTATATTATTGATGCAGACGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

77.519

97.727

0.758