Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   LUA14_RS09025 Genome accession   NZ_CP089530
Coordinates   1760448..1760879 (+) Length   143 a.a.
NCBI ID   WP_003154113.1    Uniprot ID   A7Z4X3
Organism   Bacillus amyloliquefaciens strain LS1-002-014s     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1755448..1765879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUA14_RS09005 (LUA14_09005) spoVS 1756018..1756278 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  LUA14_RS09010 (LUA14_09010) tdh 1756536..1757582 (+) 1047 WP_043021104.1 L-threonine 3-dehydrogenase -
  LUA14_RS09015 (LUA14_09015) - 1757595..1758773 (+) 1179 WP_098081411.1 glycine C-acetyltransferase -
  LUA14_RS09020 (LUA14_09020) miaB 1758916..1760445 (+) 1530 WP_012117585.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  LUA14_RS09025 (LUA14_09025) ymcA 1760448..1760879 (+) 432 WP_003154113.1 RicAFT regulatory complex protein RicA family protein Regulator
  LUA14_RS09030 (LUA14_09030) cotE 1761131..1761676 (+) 546 WP_003154111.1 outer spore coat protein CotE -
  LUA14_RS09035 (LUA14_09035) hexA 1761795..1764380 (+) 2586 WP_025284749.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16082.22 Da        Isoelectric Point: 5.0213

>NTDB_id=551865 LUA14_RS09025 WP_003154113.1 1760448..1760879(+) (ymcA) [Bacillus amyloliquefaciens strain LS1-002-014s]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENEKVSAIINQIKTLQKQAVNLKHYEKLEALKQVESKIDALQE
ELEGIPIIQEFRDSQIEVNDLLQLVAHTISNQVTNEIITSTGGNLLTGETGSKVKHSNNSCSI

Nucleotide


Download         Length: 432 bp        

>NTDB_id=551865 LUA14_RS09025 WP_003154113.1 1760448..1760879(+) (ymcA) [Bacillus amyloliquefaciens strain LS1-002-014s]
ATGACGCTTTACTCAAAGAAAGACATTGTACAGCAGGCTAGGAACCTTGCGAAAATGATTTCTGAAACAGAAGAAGTTGA
TTTTTTCAAACGCGCCGAGGCGCAGATTAACGAAAATGAAAAAGTCTCTGCAATTATTAATCAGATTAAAACCCTGCAAA
AGCAAGCCGTTAACCTGAAGCACTACGAAAAGCTTGAAGCGCTGAAACAAGTGGAAAGTAAAATTGACGCCCTGCAGGAA
GAGCTTGAAGGGATTCCGATCATTCAGGAATTCAGAGATTCCCAGATTGAGGTCAATGACCTTCTTCAGCTTGTCGCACA
TACGATCTCAAATCAGGTGACAAACGAAATCATTACATCTACCGGAGGCAACCTGCTGACGGGAGAAACCGGTTCAAAAG
TAAAACATTCGAATAACAGCTGTTCTATTTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z4X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

91.608

100

0.916