Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   J4774_RS12320 Genome accession   NZ_CP072310
Coordinates   2468776..2469174 (-) Length   132 a.a.
NCBI ID   WP_014304317.1    Uniprot ID   -
Organism   Bacillus velezensis strain AD8     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 2463776..2474174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4774_RS19255 - 2464776..2464901 (-) 126 Protein_2395 hypothetical protein -
  J4774_RS12290 - 2465054..2466256 (+) 1203 WP_139890341.1 GTP-binding protein -
  J4774_RS12295 - 2466321..2467457 (+) 1137 WP_003156594.1 zinc-dependent alcohol dehydrogenase -
  J4774_RS12300 - 2467472..2467906 (+) 435 WP_003156592.1 RDD family protein -
  J4774_RS12305 - 2467978..2468298 (+) 321 WP_014304315.1 YckD family protein -
  J4774_RS12315 - 2468517..2468735 (+) 219 Protein_2400 family 1 glycosylhydrolase -
  J4774_RS12320 nin/comJ 2468776..2469174 (-) 399 WP_014304317.1 competence protein ComJ Regulator
  J4774_RS12325 nucA/comI 2469196..2469633 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  J4774_RS12330 hxlB 2469992..2470549 (-) 558 WP_003156587.1 6-phospho-3-hexuloisomerase -
  J4774_RS12335 hxlA 2470546..2471181 (-) 636 WP_003156586.1 3-hexulose-6-phosphate synthase -
  J4774_RS12340 - 2471413..2471775 (+) 363 WP_003156585.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 15049.01 Da        Isoelectric Point: 4.6564

>NTDB_id=551828 J4774_RS12320 WP_014304317.1 2468776..2469174(-) (nin/comJ) [Bacillus velezensis strain AD8]
MNKSWKPQELAISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVFRLNTSEPVLSYEKKATVPF
EAVKDGIEIESVMSKRLFFNIPKGRYSLTCYSVPAEISDLHADTYIIDADAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=551828 J4774_RS12320 WP_014304317.1 2468776..2469174(-) (nin/comJ) [Bacillus velezensis strain AD8]
TTGAATAAATCATGGAAACCGCAAGAACTGGCCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATATGCGGAAGCTGACGGAGCTGTTTCATTCGAAGCAAGGAGAA
ATACGAGGGCATTTATCGTCTTCAGGCTTAACACAAGTGAACCGGTACTATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCAAAGCGGCTTTTCTTTAATATTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCGGATACGTATATTATTGATGCAGACGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

77.519

97.727

0.758