Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   J4774_RS05955 Genome accession   NZ_CP072310
Coordinates   1236547..1237191 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain AD8     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1231547..1242191
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J4774_RS05920 - 1232732..1233163 (+) 432 WP_003152066.1 Na(+)/H(+) antiporter subunit B -
  J4774_RS05925 - 1233163..1233504 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  J4774_RS05930 - 1233497..1234978 (+) 1482 WP_139889984.1 Na+/H+ antiporter subunit D -
  J4774_RS05935 - 1234984..1235460 (+) 477 WP_003152059.1 Na+/H+ antiporter subunit E -
  J4774_RS05940 - 1235460..1235744 (+) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  J4774_RS05945 mnhG 1235728..1236102 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  J4774_RS05950 - 1236142..1236525 (-) 384 WP_003152054.1 hotdog fold thioesterase -
  J4774_RS05955 comA 1236547..1237191 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  J4774_RS05960 comP 1237272..1239575 (-) 2304 WP_003152050.1 histidine kinase Regulator
  J4774_RS05965 comX 1239595..1239774 (-) 180 WP_306383677.1 competence pheromone ComX -
  J4774_RS05970 comQ 1239728..1240714 (-) 987 WP_269321599.1 class 1 isoprenoid biosynthesis enzyme Regulator
  J4774_RS05975 degQ 1240845..1240985 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  J4774_RS05980 - 1241451..1241792 (+) 342 WP_014305721.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=551805 J4774_RS05955 WP_003152052.1 1236547..1237191(-) (comA) [Bacillus velezensis strain AD8]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=551805 J4774_RS05955 WP_003152052.1 1236547..1237191(-) (comA) [Bacillus velezensis strain AD8]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGTGGCATCGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAATAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864