Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   J6I88_RS01665 Genome accession   NZ_CP072305
Coordinates   352401..352883 (+) Length   160 a.a.
NCBI ID   WP_001046417.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain KSK Sensitive     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 347401..357883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6I88_RS01655 (J6I88_01655) pilX 347704..348522 (+) 819 WP_000149378.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  J6I88_RS01660 (J6I88_01660) pilY1 348534..352388 (+) 3855 WP_000768958.1 PilC/PilY family type IV pilus protein Machinery gene
  J6I88_RS01665 (J6I88_01665) pilY2 352401..352883 (+) 483 WP_001046417.1 type IV pilin protein Machinery gene
  J6I88_RS01670 (J6I88_01670) pilE 352880..353305 (+) 426 WP_000788346.1 type IV pilin protein Machinery gene
  J6I88_RS01675 (J6I88_01675) rpsP 353452..353703 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  J6I88_RS01680 (J6I88_01680) rimM 353723..354271 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  J6I88_RS01685 (J6I88_01685) trmD 354317..355057 (+) 741 WP_000464596.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  J6I88_RS01690 (J6I88_01690) rplS 355265..355633 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  J6I88_RS01695 (J6I88_01695) - 355685..356626 (-) 942 WP_085943440.1 lipase family alpha/beta hydrolase -
  J6I88_RS01700 (J6I88_01700) - 356741..357775 (-) 1035 WP_001189451.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17516.77 Da        Isoelectric Point: 8.4817

>NTDB_id=551740 J6I88_RS01665 WP_001046417.1 352401..352883(+) (pilY2) [Acinetobacter baumannii strain KSK Sensitive]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNAAANGQTWVIKATTTDSRNFNFIAKNSGLRCQSLTATAVDNDCGGTVTCNVCETNSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=551740 J6I88_RS01665 WP_001046417.1 352401..352883(+) (pilY2) [Acinetobacter baumannii strain KSK Sensitive]
ATGAATAAATACTCTATTCTACGGTTCAATCAGGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAGATTACTGATGATACGACGACAGGAAATTTATTGACGAATGCTGCTGCAAATGGGCAAAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAACTTTAATTTTATTGCTAAGAATTCAGGTTTGCGTTGTCAAAGTT
TAACAGCTACGGCTGTTGATAATGACTGTGGTGGAACAGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

98.125

100

0.981
  comE Acinetobacter baylyi ADP1

41.279

100

0.444