Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   J6I88_RS01640 Genome accession   NZ_CP072305
Coordinates   345678..346151 (+) Length   157 a.a.
NCBI ID   WP_001214058.1    Uniprot ID   A0A1E3M9I3
Organism   Acinetobacter baumannii strain KSK Sensitive     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 340678..351151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6I88_RS01615 (J6I88_01615) - 341141..343246 (-) 2106 WP_001117590.1 RelA/SpoT family protein -
  J6I88_RS01620 (J6I88_01620) - 343286..343416 (-) 131 Protein_310 hypothetical protein -
  J6I88_RS01625 (J6I88_01625) rpoZ 343455..343733 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  J6I88_RS01630 (J6I88_01630) gmk 343806..344435 (-) 630 WP_000015937.1 guanylate kinase -
  J6I88_RS01635 (J6I88_01635) ispH 344558..345508 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  J6I88_RS01640 (J6I88_01640) fimU 345678..346151 (+) 474 WP_001214058.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  J6I88_RS01645 (J6I88_01645) pilV 346145..346705 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  J6I88_RS01650 (J6I88_01650) pilW 346706..347707 (+) 1002 WP_000079196.1 PilW family protein Machinery gene
  J6I88_RS01655 (J6I88_01655) pilX 347704..348522 (+) 819 WP_000149378.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16823.45 Da        Isoelectric Point: 9.3085

>NTDB_id=551735 J6I88_RS01640 WP_001214058.1 345678..346151(+) (fimU) [Acinetobacter baumannii strain KSK Sensitive]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPS
SLNWKTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=551735 J6I88_RS01640 WP_001214058.1 345678..346151(+) (fimU) [Acinetobacter baumannii strain KSK Sensitive]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGCCGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCTCT
TCATTAAATTGGAAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAATGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E3M9I3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

98.726

100

0.987