Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   LUY96_RS08545 Genome accession   NZ_CP089502
Coordinates   1676284..1676880 (-) Length   198 a.a.
NCBI ID   WP_000559156.1    Uniprot ID   Q8NY07
Organism   Staphylococcus aureus strain 3488_VV_ ST8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1671284..1681880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUY96_RS08540 - 1675981..1676079 (-) 99 WP_001791812.1 hypothetical protein -
  LUY96_RS08545 recR 1676284..1676880 (-) 597 WP_000559156.1 recombination mediator RecR Machinery gene
  LUY96_RS08550 - 1676887..1677204 (-) 318 WP_001213992.1 YbaB/EbfC family nucleoid-associated protein -
  LUY96_RS08555 dnaX 1677294..1678991 (-) 1698 WP_001109047.1 DNA polymerase III subunit gamma/tau -
  LUY96_RS08560 - 1679060..1679584 (-) 525 WP_001167828.1 GNAT family N-acetyltransferase -
  LUY96_RS08565 - 1679722..1679823 (-) 102 WP_001790661.1 hypothetical protein -
  LUY96_RS08575 treR 1680223..1680951 (-) 729 WP_001118675.1 trehalose operon repressor -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22099.51 Da        Isoelectric Point: 4.7564

>NTDB_id=551599 LUY96_RS08545 WP_000559156.1 1676284..1676880(-) (recR) [Staphylococcus aureus strain 3488_VV_ ST8]
MHYPEPISKLIDSFMKLPGIGPKTAQRLAFHTLDMKEDDVVQFAKALVDVKRELTYCSVCGHITENDPCYICEDKQRDRS
VICVVEDDKDVIAMEKMREYKGLYHVLHGSISPMDGIGPEDINIPSLIERLKNDEVSELILAMNPNLEGESTAMYISRLV
KPIGIKVTRLAQGLSVGGDLEYADEVTLSKAIAGRTEM

Nucleotide


Download         Length: 597 bp        

>NTDB_id=551599 LUY96_RS08545 WP_000559156.1 1676284..1676880(-) (recR) [Staphylococcus aureus strain 3488_VV_ ST8]
ATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACG
TCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAAT
TAACATATTGTAGCGTATGTGGTCACATTACTGAAAATGATCCATGTTATATTTGTGAAGATAAGCAAAGAGATCGTTCA
GTTATTTGTGTTGTGGAAGATGACAAAGATGTCATAGCTATGGAAAAAATGAGAGAATACAAAGGTTTATATCACGTTTT
ACATGGGTCTATTTCGCCTATGGATGGCATTGGACCAGAAGATATTAATATTCCTTCATTGATTGAACGCTTGAAAAACG
ATGAAGTTAGCGAATTAATCTTAGCTATGAACCCGAACTTAGAGGGGGAATCTACAGCCATGTATATTTCTAGATTAGTT
AAGCCTATAGGTATCAAAGTGACGAGATTAGCACAAGGGTTATCGGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAAC
ATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-171)

RecR protein (RecR_ZnF)

(40-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8NY07

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

77.273

100

0.773
  recR Streptococcus pneumoniae R6

64.141

100

0.641
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.205

98.485

0.475