Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   J6F37_RS01660 Genome accession   NZ_CP072280
Coordinates   351028..351846 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain KSK10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 346028..356846
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6F37_RS01625 (J6F37_01625) - 346610..346740 (-) 131 Protein_311 hypothetical protein -
  J6F37_RS01630 (J6F37_01630) rpoZ 346779..347057 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  J6F37_RS01635 (J6F37_01635) gmk 347130..347759 (-) 630 WP_000015937.1 guanylate kinase -
  J6F37_RS01640 (J6F37_01640) ispH 347882..348832 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  J6F37_RS01645 (J6F37_01645) fimU 349002..349475 (+) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  J6F37_RS01650 (J6F37_01650) pilV 349469..350029 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  J6F37_RS01655 (J6F37_01655) pilW 350030..351031 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  J6F37_RS01660 (J6F37_01660) pilX 351028..351846 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  J6F37_RS01665 (J6F37_01665) pilY1 351858..355712 (+) 3855 WP_000768966.1 PilC/PilY family type IV pilus protein Machinery gene
  J6F37_RS01670 (J6F37_01670) pilY2 355725..356207 (+) 483 WP_001046417.1 type IV pilin protein Machinery gene
  J6F37_RS01675 (J6F37_01675) pilE 356204..356629 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=551504 J6F37_RS01660 WP_000149374.1 351028..351846(+) (pilX) [Acinetobacter baumannii strain KSK10]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=551504 J6F37_RS01660 WP_000149374.1 351028..351846(+) (pilX) [Acinetobacter baumannii strain KSK10]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCTATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993