Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   J6F37_RS01645 Genome accession   NZ_CP072280
Coordinates   349002..349475 (+) Length   157 a.a.
NCBI ID   WP_001214065.1    Uniprot ID   N9K1Q3
Organism   Acinetobacter baumannii strain KSK10     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 344002..354475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J6F37_RS01620 (J6F37_01620) - 344465..346570 (-) 2106 WP_001117590.1 RelA/SpoT family protein -
  J6F37_RS01625 (J6F37_01625) - 346610..346740 (-) 131 Protein_311 hypothetical protein -
  J6F37_RS01630 (J6F37_01630) rpoZ 346779..347057 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  J6F37_RS01635 (J6F37_01635) gmk 347130..347759 (-) 630 WP_000015937.1 guanylate kinase -
  J6F37_RS01640 (J6F37_01640) ispH 347882..348832 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  J6F37_RS01645 (J6F37_01645) fimU 349002..349475 (+) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  J6F37_RS01650 (J6F37_01650) pilV 349469..350029 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  J6F37_RS01655 (J6F37_01655) pilW 350030..351031 (+) 1002 WP_000079200.1 PilW family protein Machinery gene
  J6F37_RS01660 (J6F37_01660) pilX 351028..351846 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16837.43 Da        Isoelectric Point: 8.5355

>NTDB_id=551501 J6F37_RS01645 WP_001214065.1 349002..349475(+) (fimU) [Acinetobacter baumannii strain KSK10]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=551501 J6F37_RS01645 WP_001214065.1 349002..349475(+) (fimU) [Acinetobacter baumannii strain KSK10]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCACCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

100

100

1