Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrC   Type   Regulator
Locus tag   B938_RS01965 Genome accession   NC_019842
Coordinates   393202..393321 (+) Length   39 a.a.
NCBI ID   WP_003156334.1    Uniprot ID   I2C1C3
Organism   Bacillus velezensis AS43.3     
Function   antagonize RapC (predicted from homology)   
Competence regulation

Genomic Context

Location: 388202..398321
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B938_RS01950 (B938_01760) - 389814..390497 (+) 684 WP_007410267.1 response regulator transcription factor -
  B938_RS01955 (B938_01765) - 390484..391917 (+) 1434 WP_165913860.1 sensor histidine kinase -
  B938_RS01960 (B938_01775) rapC 392070..393218 (+) 1149 WP_007410270.1 Rap family tetratricopeptide repeat protein Regulator
  B938_RS01965 (B938_01780) phrC 393202..393321 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  B938_RS19475 - 393470..393580 (-) 111 WP_370529518.1 YjcZ family sporulation protein -
  B938_RS01970 (B938_01785) - 393660..395024 (-) 1365 WP_015239155.1 aspartate kinase -
  B938_RS01975 (B938_01790) ceuB 395438..396391 (+) 954 WP_015239156.1 ABC transporter permease Machinery gene
  B938_RS01980 (B938_01795) - 396381..397328 (+) 948 WP_014416905.1 iron chelate uptake ABC transporter family permease subunit -
  B938_RS01985 (B938_01800) - 397322..398080 (+) 759 WP_003156330.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4228.96 Da        Isoelectric Point: 8.0285

>NTDB_id=55124 B938_RS01965 WP_003156334.1 393202..393321(+) (phrC) [Bacillus velezensis AS43.3]
MKLKSKWFVICLAAAAIFTVTGAGQTDQAEFHVAERGMT

Nucleotide


Download         Length: 120 bp        

>NTDB_id=55124 B938_RS01965 WP_003156334.1 393202..393321(+) (phrC) [Bacillus velezensis AS43.3]
ATGAAATTGAAATCTAAATGGTTTGTTATTTGTTTAGCAGCCGCCGCGATTTTTACAGTGACAGGTGCAGGCCAGACAGA
TCAGGCTGAATTCCATGTAGCTGAAAGAGGAATGACGTGA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C1C3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrC Bacillus subtilis subsp. subtilis str. 168

70

100

0.718

Multiple sequence alignment