Detailed information NTG0055098

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: DEIPE_RS16675
• Genome accession: NC_019793
• Coordinates: 3440169..3441389 (-)
• Length: 406 a.a.
• NCBI ID: WP_015237149.1
• Uniprot ID: L0A4R7
• Organism: Deinococcus peraridilitoris DSM 19664
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3435169..3446389

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DEIPE_RS16665 (Deipe_3413)	-	3435410..3436342 (+)	933	WP_015237147.1	right-handed parallel beta-helix repeat-containing protein	-
DEIPE_RS22470 (Deipe_3414)	-	3436587..3440126 (+)	3540	WP_015237148.1	acyltransferase family protein	-
DEIPE_RS16675 (Deipe_3415)	pilC	3440169..3441389 (-)	1221	WP_015237149.1	type II secretion system F family protein	Machinery gene
DEIPE_RS16680 (Deipe_3416)	-	3441460..3442062 (+)	603	WP_015237150.1	L-threonylcarbamoyladenylate synthase	-
DEIPE_RS16685 (Deipe_3417)	scpB	3442050..3442583 (+)	534	WP_015237151.1	SMC-Scp complex subunit ScpB	-
DEIPE_RS22475 (Deipe_3418)	-	3442587..3443348 (+)	762	WP_015237152.1	DUF4388 domain-containing protein	-
DEIPE_RS16695 (Deipe_3419)	gatA	3443478..3444932 (+)	1455	WP_015237153.1	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	-

Sequence

Protein

• Length: 406 a.a.
• Molecular weight: 44638.70 Da
• Isoelectric Point: 9.3320

>NTDB_id=55098 DEIPE_RS16675 WP_015237149.1 3440169..3441389(-) (pilC) [Deinococcus peraridilitoris DSM 19664]
MPVFEYRVRDRNGKVFASQIEADTMAQVRDALRAKELFIVNIKPPKTGLQGDIKIPFLDNQPPGLKQVALFSRQLATMIN
SGVPLVQSLAIMQRQMEHKGFQKIIKEMRADVESGTPLSDSIAKYPKVFSRLYLNLIRAGETSGTLDLILDRISTFLEKD
LALRGKIKSAMTYPVIVLVFALGVTYFLLTTIVPQFAQILIQLGAPLPLITRILIAVADFLTSKSWMLGLAGIVVFFAFR
AYYRTDQGRHVIDDIKLRVAVLGPLIRRSAVASFARTFGLLITSGVNIIESLEITKGTANNIIVEDAIENAKNVVMVGEQ
MSGSLATSKVFPPMVVSMVSIGEETGALDKMLDKVADYYDREVDEAVDSMTAAIEPIMIVFLGGIIGMIVAGMFLPMFSI
IGQLSQ

Nucleotide

• Length: 1221 bp

>NTDB_id=55098 DEIPE_RS16675 WP_015237149.1 3440169..3441389(-) (pilC) [Deinococcus peraridilitoris DSM 19664]
ATGCCCGTTTTTGAGTACCGAGTGCGCGACCGAAATGGCAAGGTTTTTGCCTCGCAAATCGAGGCGGATACCATGGCTCA
GGTTCGAGACGCGCTGCGCGCCAAAGAACTGTTCATCGTCAATATTAAGCCGCCCAAGACCGGCTTGCAGGGTGATATCA
AAATTCCTTTTCTGGACAACCAGCCTCCTGGGCTGAAACAGGTGGCGCTGTTCTCTCGGCAGCTTGCCACGATGATCAAC
TCGGGTGTCCCGCTGGTGCAGTCCCTTGCCATCATGCAGCGCCAGATGGAGCACAAGGGATTTCAAAAGATCATCAAGGA
AATGCGCGCCGACGTCGAATCGGGCACCCCACTCTCGGACTCGATCGCCAAGTACCCCAAGGTCTTTTCGCGGCTGTACC
TCAACTTGATCCGGGCCGGTGAAACCTCCGGCACGCTGGACCTGATTCTCGACCGCATCAGTACCTTTCTGGAGAAAGAT
CTGGCGCTGCGGGGCAAAATCAAAAGTGCCATGACCTATCCGGTTATCGTGCTGGTCTTCGCGCTGGGCGTCACCTACTT
TCTGCTCACCACCATCGTGCCGCAGTTCGCGCAGATTCTGATTCAGCTCGGCGCGCCCCTGCCGCTGATCACCCGCATCC
TGATCGCCGTGGCCGACTTCCTGACCTCCAAATCTTGGATGCTCGGGTTGGCGGGAATCGTCGTGTTCTTTGCCTTCCGG
GCGTATTACCGCACCGATCAGGGCCGGCACGTCATCGACGACATCAAGCTGCGGGTCGCGGTGCTCGGTCCGCTGATCCG
CCGTTCGGCGGTGGCGTCGTTTGCGCGCACCTTCGGTCTGCTCATCACCAGCGGCGTGAACATCATCGAAAGCCTGGAGA
TCACCAAGGGCACCGCCAACAACATCATCGTCGAGGACGCCATCGAAAACGCCAAGAACGTCGTGATGGTCGGTGAACAG
ATGTCCGGCTCGCTGGCCACTTCCAAAGTGTTTCCGCCCATGGTGGTGTCGATGGTCTCGATCGGCGAAGAGACTGGTGC
ACTCGACAAGATGCTCGACAAAGTGGCCGATTACTACGACCGCGAGGTCGACGAGGCGGTCGACAGCATGACGGCCGCTA
TCGAACCCATCATGATCGTCTTCCTGGGAGGCATCATCGGCATGATCGTGGCCGGCATGTTCCTCCCGATGTTTTCGATC
ATCGGCCAGCTCAGTCAGTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (274-396)

• Type II secretion system (T2SS), protein F (T2SSF) (71-194)

3D structure

• AlphaFold DB: L0A4R7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Thermus thermophilus HB27	59.606	100	0.596
pilC	Legionella pneumophila strain ERS1305867	37.25	98.522	0.367