Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   DEIPE_RS10290 Genome accession   NC_019793
Coordinates   2083829..2084203 (-) Length   124 a.a.
NCBI ID   WP_245557524.1    Uniprot ID   -
Organism   Deinococcus peraridilitoris DSM 19664     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2078829..2089203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DEIPE_RS10250 (Deipe_2099) - 2079012..2079263 (-) 252 WP_015235899.1 hypothetical protein -
  DEIPE_RS10255 (Deipe_2100) - 2079277..2079468 (-) 192 WP_015235900.1 hypothetical protein -
  DEIPE_RS10260 (Deipe_2101) - 2079765..2080223 (-) 459 WP_015235901.1 DUF5662 family protein -
  DEIPE_RS10265 (Deipe_2102) - 2080250..2080969 (-) 720 WP_015235902.1 DNA cytosine methyltransferase -
  DEIPE_RS10270 (Deipe_2103) - 2080999..2081310 (-) 312 WP_015235903.1 hypothetical protein -
  DEIPE_RS10275 (Deipe_2104) - 2081370..2081648 (-) 279 WP_015235904.1 hypothetical protein -
  DEIPE_RS10280 (Deipe_2105) - 2081645..2081881 (-) 237 WP_015235905.1 hypothetical protein -
  DEIPE_RS23970 (Deipe_2106) - 2081882..2082031 (-) 150 WP_015235906.1 CopG family transcriptional regulator -
  DEIPE_RS10285 (Deipe_2107) - 2082009..2083829 (-) 1821 WP_015235907.1 ComEC/Rec2 family competence protein -
  DEIPE_RS10290 (Deipe_2108) comEA 2083829..2084203 (-) 375 WP_245557524.1 helix-hairpin-helix domain-containing protein Machinery gene
  DEIPE_RS10305 (Deipe_2112) - 2085139..2087637 (+) 2499 WP_015235909.1 glycoside hydrolase family 2 protein -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 13219.38 Da        Isoelectric Point: 9.2245

>NTDB_id=55090 DEIPE_RS10290 WP_245557524.1 2083829..2084203(-) (comEA) [Deinococcus peraridilitoris DSM 19664]
MKFKDHAAGAVLTLAAVCCGGWAVWPHLFPAPQDVQVARHELPSPTPRDVAPEYRHTASVAPLISGRVNVNTASRAQLEA
LPRIGPALAERLIAGRPYRSLADLDTVKGIGPKLLETLAPLVAF

Nucleotide


Download         Length: 375 bp        

>NTDB_id=55090 DEIPE_RS10290 WP_245557524.1 2083829..2084203(-) (comEA) [Deinococcus peraridilitoris DSM 19664]
GTGAAGTTCAAAGACCACGCTGCGGGTGCCGTGCTGACGCTTGCCGCCGTATGCTGCGGGGGCTGGGCCGTGTGGCCTCA
CCTGTTCCCTGCCCCGCAGGACGTGCAGGTCGCGCGGCACGAGCTGCCCTCACCCACGCCGCGCGATGTTGCACCCGAGT
ACCGTCACACGGCGAGCGTCGCGCCCCTCATCAGTGGCCGGGTGAACGTGAACACCGCGTCCAGGGCGCAACTGGAGGCG
CTGCCGAGAATCGGCCCGGCCCTCGCGGAGCGCCTCATCGCCGGACGCCCGTACCGTTCACTCGCAGACCTCGACACCGT
GAAGGGCATCGGGCCGAAGCTGCTGGAGACACTGGCTCCGCTCGTCGCCTTCTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(66-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

56.034

93.548

0.524

Multiple sequence alignment