Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   J5P21_RS16620 Genome accession   NZ_CP072122
Coordinates   3472097..3472579 (-) Length   160 a.a.
NCBI ID   WP_001046417.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain KSK1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3467097..3477579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5P21_RS16585 (J5P21_16585) - 3467205..3468239 (+) 1035 WP_001189451.1 lipase secretion chaperone -
  J5P21_RS16590 (J5P21_16590) - 3468354..3469295 (+) 942 WP_085946156.1 lipase family alpha/beta hydrolase -
  J5P21_RS16595 (J5P21_16595) rplS 3469347..3469715 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  J5P21_RS16600 (J5P21_16600) trmD 3469923..3470663 (-) 741 WP_000464599.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  J5P21_RS16605 (J5P21_16605) rimM 3470709..3471257 (-) 549 WP_000189236.1 ribosome maturation factor RimM -
  J5P21_RS16610 (J5P21_16610) rpsP 3471277..3471528 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  J5P21_RS16615 (J5P21_16615) pilE 3471675..3472100 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  J5P21_RS16620 (J5P21_16620) pilY2 3472097..3472579 (-) 483 WP_001046417.1 type IV pilin protein Machinery gene
  J5P21_RS16625 (J5P21_16625) pilY1 3472592..3476446 (-) 3855 WP_000768966.1 PilC/PilY family type IV pilus protein Machinery gene
  J5P21_RS16630 (J5P21_16630) pilX 3476458..3477276 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17516.77 Da        Isoelectric Point: 8.4817

>NTDB_id=550779 J5P21_RS16620 WP_001046417.1 3472097..3472579(-) (pilY2) [Acinetobacter baumannii strain KSK1]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNAAANGQTWVIKATTTDSRNFNFIAKNSGLRCQSLTATAVDNDCGGTVTCNVCETNSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=550779 J5P21_RS16620 WP_001046417.1 3472097..3472579(-) (pilY2) [Acinetobacter baumannii strain KSK1]
ATGAATAAGTACTCTATTCTACGGTTCAATCAAGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTGGAACAGCATAAATCAAGAAATTTTACTTATAGGGGGTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAGATTACTGATGATACGACGACAGGAAATTTATTGACGAATGCTGCTGCAAATGGACAAAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAACTTTAATTTTATTGCTAAGAATTCAGGTTTGCGTTGTCAAAGTT
TAACAGCTACGGCTGTTGATAATGACTGTGGTGGAACAGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

98.125

100

0.981
  comE Acinetobacter baylyi ADP1

41.279

100

0.444