Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   J5P21_RS07645 Genome accession   NZ_CP072122
Coordinates   1606720..1607100 (+) Length   126 a.a.
NCBI ID   WP_045544207.1    Uniprot ID   A0A1Y1P0I7
Organism   Acinetobacter baumannii strain KSK1     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1601720..1612100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5P21_RS07615 (J5P21_07615) kdsB 1602623..1603384 (+) 762 WP_045544209.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  J5P21_RS07620 (J5P21_07620) - 1603396..1604376 (+) 981 WP_045544208.1 DNA polymerase III subunit delta' -
  J5P21_RS07625 (J5P21_07625) - 1604388..1604729 (+) 342 WP_001183024.1 PilZ domain-containing protein -
  J5P21_RS07630 (J5P21_07630) - 1604747..1605520 (+) 774 WP_000497298.1 TatD family hydrolase -
  J5P21_RS07635 (J5P21_07635) - 1605558..1606166 (+) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  J5P21_RS07640 (J5P21_07640) - 1606176..1606730 (+) 555 WP_000841373.1 type II secretion system protein -
  J5P21_RS07645 (J5P21_07645) xcpV 1606720..1607100 (+) 381 WP_045544207.1 type II secretion system minor pseudopilin GspI Machinery gene
  J5P21_RS07650 (J5P21_07650) xcpW 1607100..1607801 (+) 702 WP_000594572.1 type II secretion system minor pseudopilin GspJ Machinery gene
  J5P21_RS07655 (J5P21_07655) gspK 1607801..1608760 (+) 960 WP_045544206.1 type II secretion system minor pseudopilin GspK -
  J5P21_RS07660 (J5P21_07660) - 1608990..1609586 (+) 597 WP_000908453.1 6-pyruvoyl trahydropterin synthase family protein -
  J5P21_RS07665 (J5P21_07665) ung 1609637..1610350 (+) 714 WP_001177530.1 uracil-DNA glycosylase -
  J5P21_RS07670 (J5P21_07670) - 1610347..1611471 (+) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  J5P21_RS07675 (J5P21_07675) tadA 1611478..1611981 (+) 504 WP_000033177.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 14035.30 Da        Isoelectric Point: 9.8004

>NTDB_id=550768 J5P21_RS07645 WP_045544207.1 1606720..1607100(+) (xcpV) [Acinetobacter baumannii strain KSK1]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTFQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=550768 J5P21_RS07645 WP_045544207.1 1606720..1607100(+) (xcpV) [Acinetobacter baumannii strain KSK1]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTTCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y1P0I7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

99.206

100

0.992