Detailed information NTG0550769

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: J5P21_RS07650
• Genome accession: NZ_CP072122
• Coordinates: 1607100..1607801 (+)
• Length: 233 a.a.
• NCBI ID: WP_000594572.1
• Uniprot ID: A0A009IN88
• Organism: Acinetobacter baumannii strain KSK1
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1602100..1612801

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J5P21_RS07615 (J5P21_07615)	kdsB	1602623..1603384 (+)	762	WP_045544209.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
J5P21_RS07620 (J5P21_07620)	-	1603396..1604376 (+)	981	WP_045544208.1	DNA polymerase III subunit delta'	-
J5P21_RS07625 (J5P21_07625)	-	1604388..1604729 (+)	342	WP_001183024.1	PilZ domain-containing protein	-
J5P21_RS07630 (J5P21_07630)	-	1604747..1605520 (+)	774	WP_000497298.1	TatD family hydrolase	-
J5P21_RS07635 (J5P21_07635)	-	1605558..1606166 (+)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
J5P21_RS07640 (J5P21_07640)	-	1606176..1606730 (+)	555	WP_000841373.1	type II secretion system protein	-
J5P21_RS07645 (J5P21_07645)	xcpV	1606720..1607100 (+)	381	WP_045544207.1	type II secretion system minor pseudopilin GspI	Machinery gene
J5P21_RS07650 (J5P21_07650)	xcpW	1607100..1607801 (+)	702	WP_000594572.1	type II secretion system minor pseudopilin GspJ	Machinery gene
J5P21_RS07655 (J5P21_07655)	gspK	1607801..1608760 (+)	960	WP_045544206.1	type II secretion system minor pseudopilin GspK	-
J5P21_RS07660 (J5P21_07660)	-	1608990..1609586 (+)	597	WP_000908453.1	6-pyruvoyl trahydropterin synthase family protein	-
J5P21_RS07665 (J5P21_07665)	ung	1609637..1610350 (+)	714	WP_001177530.1	uracil-DNA glycosylase	-
J5P21_RS07670 (J5P21_07670)	-	1610347..1611471 (+)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
J5P21_RS07675 (J5P21_07675)	tadA	1611478..1611981 (+)	504	WP_000033177.1	tRNA adenosine(34) deaminase TadA	-
J5P21_RS07680 (J5P21_07680)	-	1612051..1612494 (+)	444	WP_045544205.1	SRPBCC family protein	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26613.59 Da
• Isoelectric Point: 9.5501

>NTDB_id=550769 J5P21_RS07650 WP_000594572.1 1607100..1607801(+) (xcpW) [Acinetobacter baumannii strain KSK1]
MIKNKYIHIRSFAARLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=550769 J5P21_RS07650 WP_000594572.1 1607100..1607801(+) (xcpW) [Acinetobacter baumannii strain KSK1]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTGCTGCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCCAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATAGATAA
TCAAATTCTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

3D structure

• AlphaFold DB: A0A009IN88

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	99.142	100	0.991