Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   J5X95_RS16270 Genome accession   NZ_CP072120
Coordinates   3176071..3176535 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus amyloliquefaciens strain GKT04     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3171071..3181535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5X95_RS16250 (J5X95_16250) - 3171552..3173372 (+) 1821 WP_007409606.1 PAS domain-containing protein -
  J5X95_RS16255 (J5X95_16255) - 3173353..3174566 (-) 1214 Protein_3159 aminotransferase A -
  J5X95_RS16260 (J5X95_16260) - 3174767..3174928 (-) 162 WP_007409608.1 hypothetical protein -
  J5X95_RS16265 (J5X95_16265) cheV 3175117..3176028 (+) 912 WP_007409609.1 chemotaxis protein CheV -
  J5X95_RS16270 (J5X95_16270) kre 3176071..3176535 (-) 465 WP_003154622.1 YkyB family protein Regulator
  J5X95_RS16275 (J5X95_16275) - 3176658..3177950 (-) 1293 WP_015239757.1 MFS transporter -
  J5X95_RS16280 (J5X95_16280) - 3178026..3178520 (-) 495 WP_088462390.1 L,D-transpeptidase family protein -
  J5X95_RS16285 (J5X95_16285) - 3178595..3179458 (-) 864 WP_020955742.1 metallophosphoesterase -
  J5X95_RS16290 (J5X95_16290) fadH 3179603..3180367 (+) 765 WP_038463789.1 2,4-dienoyl-CoA reductase -
  J5X95_RS16295 (J5X95_16295) - 3180506..3181027 (+) 522 WP_099320047.1 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=550742 J5X95_RS16270 WP_003154622.1 3176071..3176535(-) (kre) [Bacillus amyloliquefaciens strain GKT04]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=550742 J5X95_RS16270 WP_003154622.1 3176071..3176535(-) (kre) [Bacillus amyloliquefaciens strain GKT04]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAATCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929