Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   J5X95_RS16370 Genome accession   NZ_CP072120
Coordinates   3191937..3192533 (+) Length   198 a.a.
NCBI ID   WP_003154591.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain GKT04     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3186937..3197533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5X95_RS16340 (J5X95_16340) - 3187150..3187605 (+) 456 WP_020955747.1 flavodoxin -
  J5X95_RS16345 (J5X95_16345) dapD 3187687..3188397 (+) 711 WP_007409623.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  J5X95_RS16350 (J5X95_16350) - 3188468..3189592 (+) 1125 WP_007409624.1 N-acetyldiaminopimelate deacetylase -
  J5X95_RS16355 (J5X95_16355) - 3189653..3189898 (+) 246 WP_003154596.1 YkuS family protein -
  J5X95_RS16360 (J5X95_16360) - 3189932..3190738 (-) 807 WP_038463800.1 mechanosensitive ion channel family protein -
  J5X95_RS16365 (J5X95_16365) - 3191026..3191484 (+) 459 WP_038463805.1 TlpA disulfide reductase family protein -
  J5X95_RS16370 (J5X95_16370) rok 3191937..3192533 (+) 597 WP_003154591.1 transcriptional regulator Rok Regulator
  J5X95_RS16375 (J5X95_16375) - 3192554..3193546 (-) 993 WP_007409627.1 hypothetical protein -
  J5X95_RS16380 (J5X95_16380) - 3193692..3194294 (+) 603 WP_020955749.1 molybdenum cofactor guanylyltransferase -
  J5X95_RS16385 (J5X95_16385) - 3194346..3195365 (+) 1020 WP_007611113.1 molybdopterin-synthase adenylyltransferase MoeB -
  J5X95_RS16390 (J5X95_16390) glp 3195383..3196675 (+) 1293 WP_020955750.1 gephyrin-like molybdotransferase Glp -
  J5X95_RS16395 (J5X95_16395) mobB 3196636..3197157 (+) 522 WP_007409631.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22525.57 Da        Isoelectric Point: 9.6909

>NTDB_id=550743 J5X95_RS16370 WP_003154591.1 3191937..3192533(+) (rok) [Bacillus amyloliquefaciens strain GKT04]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDNTGSLSDTKKEFRPEKKSDSLPVLAELAAQEMRSYQKPQ
TQPQSSQPQMQSITSLPAGIPDGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFM
QSLIKMYPEVKKPYRGQYILEGEISQETAETANDTAAE

Nucleotide


Download         Length: 597 bp        

>NTDB_id=550743 J5X95_RS16370 WP_003154591.1 3191937..3192533(+) (rok) [Bacillus amyloliquefaciens strain GKT04]
ATGTTTAATGAAAGAGAAGCGCTGCGCTTACGTTTAGAACAATTGAACGAAGCAGAGGTAAAAGTCATTCGTGAATATCA
AATAGAACGTGATAAAATATATGCAAAACTGAGAGAATTAGACAATACAGGCAGCCTGTCCGATACAAAAAAAGAGTTTC
GTCCGGAGAAAAAAAGTGACTCTCTCCCGGTGCTTGCAGAGCTTGCAGCACAGGAAATGAGAAGCTATCAAAAGCCGCAG
ACACAGCCTCAATCCTCCCAGCCGCAGATGCAGTCTATTACGTCTCTTCCCGCCGGCATTCCAGACGGTTCTACAAGAAG
AAGAAGAGGGACGGCGAGACCGGGATCAAAAGCGGCAAAACTGCGCGAAGCAGCGATTAAAACATTGAAACGCCACAATG
CAGCGATCAAAAGTTCCGAACTTCAAAAGGAAATTGAAAAGGAAAGCGGCCTTGAAATTCCTAATATGACAACATTTATG
CAAAGCTTAATTAAAATGTATCCGGAAGTGAAAAAACCATACCGCGGCCAATATATTCTTGAGGGAGAAATTTCTCAGGA
AACAGCAGAAACGGCAAATGATACGGCTGCTGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

86.082

97.98

0.843