Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   J5X95_RS11225 Genome accession   NZ_CP072120
Coordinates   2212343..2213296 (+) Length   317 a.a.
NCBI ID   WP_059366593.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain GKT04     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2207343..2218296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5X95_RS11200 (J5X95_11200) - 2207390..2208823 (+) 1434 WP_020955322.1 ATP-binding protein -
  J5X95_RS11205 (J5X95_11205) rapC 2208976..2210124 (+) 1149 WP_007410270.1 Rap family tetratricopeptide repeat protein Regulator
  J5X95_RS11210 (J5X95_11210) phrC 2210108..2210227 (+) 120 WP_003156334.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  J5X95_RS11215 (J5X95_11215) - 2210375..2210485 (-) 111 WP_369878517.1 YjcZ family sporulation protein -
  J5X95_RS11220 (J5X95_11220) - 2210565..2211929 (-) 1365 WP_020955323.1 aspartate kinase -
  J5X95_RS11225 (J5X95_11225) ceuB 2212343..2213296 (+) 954 WP_059366593.1 ABC transporter permease Machinery gene
  J5X95_RS11230 (J5X95_11230) - 2213286..2214233 (+) 948 WP_007410274.1 iron chelate uptake ABC transporter family permease subunit -
  J5X95_RS11235 (J5X95_11235) - 2214227..2214985 (+) 759 WP_012116804.1 ABC transporter ATP-binding protein -
  J5X95_RS11240 (J5X95_11240) - 2215007..2215951 (+) 945 WP_007410275.1 siderophore ABC transporter substrate-binding protein -
  J5X95_RS11245 (J5X95_11245) - 2215993..2217417 (-) 1425 WP_094031503.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34959.26 Da        Isoelectric Point: 9.6741

>NTDB_id=550724 J5X95_RS11225 WP_059366593.1 2212343..2213296(+) (ceuB) [Bacillus amyloliquefaciens strain GKT04]
MKLRYLLLLLAVLACTSIFIGVEDLSPLDIFHLNKEQAGTLFDSRLPRLVSIIIAGMSLSICGLIMQQISRNKFVSPTTA
GTMDWARLGILISLMLFTSASPLVKMSIAFVFALAGNFLFMKILERIKFNDAIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNLSSWLQGDFSLVVKGRYELLYLSIPLLIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLIIVSLIASLVILTVGM
LPFLGLIIPNMVSIYKGDNLRSSLPHTALLGAVFVLFCDILGRVIIFPYEISIGLMVGVIGSGIFLYMLLRRKAYES

Nucleotide


Download         Length: 954 bp        

>NTDB_id=550724 J5X95_RS11225 WP_059366593.1 2212343..2213296(+) (ceuB) [Bacillus amyloliquefaciens strain GKT04]
ATGAAGCTACGTTACTTACTTTTGCTACTGGCGGTTTTGGCGTGTACTTCTATATTTATCGGTGTAGAAGATTTGTCGCC
GCTGGATATTTTTCATTTAAATAAAGAACAGGCAGGTACATTGTTTGACAGCCGGCTGCCGCGTTTGGTGAGCATTATCA
TCGCCGGCATGAGCCTGAGCATCTGCGGATTAATCATGCAGCAGATCAGCCGGAATAAATTTGTATCGCCGACGACTGCG
GGGACGATGGACTGGGCAAGGCTCGGAATCTTGATTTCATTAATGCTTTTTACGTCAGCGAGTCCGCTTGTGAAAATGTC
TATCGCTTTCGTTTTCGCGTTGGCGGGAAATTTCCTTTTCATGAAAATCCTCGAGAGAATCAAGTTCAATGATGCGATTT
TTATTCCTCTCGTCGGTTTAATGCTTGGGAACATCGTCAGCTCAATCGCCACGTTTATCGCATATAAATATGACCTGATC
CAAAACCTGTCGTCTTGGCTGCAGGGAGATTTCTCACTGGTCGTCAAAGGCCGGTATGAGCTTTTATATCTGAGTATCCC
GCTTTTGATCATCGCTTATGTGTATGCGGATAAATTTACGGTGGCGGGAATGGGAGAGAGCTTTTCCGTCAATCTCGGCC
TGAAATACAAACGCGTCGTCAATATCGGTCTGATTATCGTGTCGCTCATCGCTTCACTGGTGATCCTGACCGTCGGGATG
CTGCCGTTTCTCGGTTTGATCATTCCCAATATGGTGTCGATTTACAAAGGGGACAACCTGAGGAGCAGCCTGCCTCACAC
CGCTCTGCTGGGCGCTGTTTTTGTGCTGTTTTGCGACATTTTGGGAAGGGTGATCATCTTCCCGTACGAAATTTCCATCG
GTCTGATGGTCGGTGTTATCGGCAGCGGCATCTTCCTGTATATGCTGTTAAGGAGAAAAGCATATGAGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.797

99.685

0.536