Detailed information NTG0550722

Bioinformatically predicted

Overview

• Name: rapC
• Type: Regulator
• Locus tag: J5X95_RS11205
• Genome accession: NZ_CP072120
• Coordinates: 2208976..2210124 (+)
• Length: 382 a.a.
• NCBI ID: WP_007410270.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain GKT04
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 2203976..2215124

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
J5X95_RS11185 (J5X95_11185)	-	2204397..2205080 (-)	684	WP_032866951.1	ABC transporter ATP-binding protein	-
J5X95_RS11190 (J5X95_11190)	-	2205095..2206507 (-)	1413	WP_020955321.1	ABC transporter permease	-
J5X95_RS11195 (J5X95_11195)	-	2206720..2207403 (+)	684	WP_007410267.1	response regulator transcription factor	-
J5X95_RS11200 (J5X95_11200)	-	2207390..2208823 (+)	1434	WP_020955322.1	ATP-binding protein	-
J5X95_RS11205 (J5X95_11205)	rapC	2208976..2210124 (+)	1149	WP_007410270.1	Rap family tetratricopeptide repeat protein	Regulator
J5X95_RS11210 (J5X95_11210)	phrC	2210108..2210227 (+)	120	WP_003156334.1	PhrC/PhrF family phosphatase-inhibitory pheromone	Regulator
J5X95_RS11215 (J5X95_11215)	-	2210375..2210485 (-)	111	WP_369878517.1	YjcZ family sporulation protein	-
J5X95_RS11220 (J5X95_11220)	-	2210565..2211929 (-)	1365	WP_020955323.1	aspartate kinase	-
J5X95_RS11225 (J5X95_11225)	ceuB	2212343..2213296 (+)	954	WP_059366593.1	ABC transporter permease	Machinery gene
J5X95_RS11230 (J5X95_11230)	-	2213286..2214233 (+)	948	WP_007410274.1	iron chelate uptake ABC transporter family permease subunit	-
J5X95_RS11235 (J5X95_11235)	-	2214227..2214985 (+)	759	WP_012116804.1	ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 45475.70 Da
• Isoelectric Point: 4.9916

>NTDB_id=550722 J5X95_RS11205 WP_007410270.1 2208976..2210124(+) (rapC) [Bacillus amyloliquefaciens strain GKT04]
MKSGLIPSSAVGQKINEWYRYIRTFSVPDAEILKAEIKQELDHMEPDSNLVLYYSLMEFRHQLMLDYLEPLEKLKIEDQP
TLSEILDNIDNSQAGLKGLLDYYVNFFKGMFEFDKREFISAITYYKQAEKKLAFVSDHVERAEFYFKVAEAYYHMKQTYF
SLIHIKNAYEIYVEQDTYNVRIIQCHFVFGVNLMDERRFEQAAKHFQHALQMAEKEQKAQLVGRALYNLGLCYYNQDRIG
EAIPYFERAVDTFESQRIVNSLPQAYFLITLIYFKLGKKEKASEYHKRGYEYAKETDDPVYTVKFEWLQALYQAKPDEET
ISACFRYLEDKNLYADIEDLALEAAKYYYEQNCFKISSDYFLKVEEARKQIQRSEGLYEIEI

Nucleotide

• Length: 1149 bp

>NTDB_id=550722 J5X95_RS11205 WP_007410270.1 2208976..2210124(+) (rapC) [Bacillus amyloliquefaciens strain GKT04]
ATGAAGAGCGGGTTAATTCCTTCTTCAGCAGTCGGGCAGAAAATTAACGAGTGGTATCGATACATCAGAACATTCAGCGT
GCCGGATGCGGAGATCTTGAAGGCCGAGATCAAACAAGAGCTTGACCATATGGAGCCTGATTCGAACTTAGTGCTTTATT
ATTCCCTCATGGAATTTCGCCATCAGCTGATGCTGGACTACTTGGAGCCGCTGGAAAAACTGAAGATAGAAGACCAGCCG
ACCCTGTCGGAAATTCTTGATAACATTGATAACAGCCAGGCCGGCCTCAAAGGGCTTCTCGATTATTACGTCAACTTTTT
CAAAGGCATGTTTGAATTTGATAAAAGAGAATTTATCTCAGCGATTACATATTATAAACAAGCTGAGAAAAAACTGGCCT
TCGTATCGGACCACGTGGAACGGGCGGAGTTTTATTTTAAAGTGGCCGAAGCTTATTATCATATGAAACAAACGTATTTT
TCTTTGATACATATAAAAAACGCTTATGAAATTTACGTAGAGCAGGACACATATAACGTCCGGATCATTCAATGCCATTT
TGTATTCGGCGTCAATTTAATGGATGAAAGGCGCTTTGAACAGGCGGCCAAACATTTTCAGCACGCTCTGCAAATGGCCG
AAAAAGAACAAAAAGCGCAGCTTGTCGGGAGGGCGCTGTATAACCTCGGACTGTGCTATTACAATCAGGACCGCATCGGC
GAAGCGATTCCGTACTTTGAACGGGCGGTCGATACATTTGAATCACAAAGAATCGTCAATTCTCTTCCTCAAGCATATTT
TCTAATCACACTCATTTACTTTAAACTCGGAAAAAAAGAAAAAGCGTCGGAATATCACAAGCGGGGATATGAATATGCTA
AAGAAACAGACGATCCCGTTTATACGGTAAAATTCGAATGGCTGCAGGCTCTGTATCAGGCGAAACCGGATGAGGAAACA
ATCAGCGCGTGTTTCCGTTACCTGGAAGATAAAAATTTATACGCCGATATAGAGGATTTAGCACTAGAAGCAGCTAAATA
TTACTATGAACAAAATTGCTTTAAAATTTCTTCTGACTATTTTCTGAAAGTCGAAGAGGCAAGGAAACAAATACAAAGGA
GTGAGGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

• Tetratricopeptide repeat (TPR_12) (223-294)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (6-66)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapC	Bacillus subtilis subsp. subtilis str. 168	82.461	100	0.825
rapF	Bacillus subtilis subsp. subtilis str. 168	57.105	99.476	0.568