Detailed information    

insolico Bioinformatically predicted

Overview


Name   comP   Type   Regulator
Locus tag   J5X95_RS04565 Genome accession   NZ_CP072120
Coordinates   890682..892982 (-) Length   766 a.a.
NCBI ID   WP_219371653.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain GKT04     
Function   phosphorylation of ComA (predicted from homology)   
Competence regulation

Genomic Context


Location: 885682..897982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J5X95_RS04525 (J5X95_04525) - 886142..886573 (+) 432 WP_007408670.1 Na(+)/H(+) antiporter subunit B -
  J5X95_RS04530 (J5X95_04530) - 886573..886914 (+) 342 WP_015418102.1 Na(+)/H(+) antiporter subunit C -
  J5X95_RS04535 (J5X95_04535) - 886907..888388 (+) 1482 WP_007408671.1 Na+/H+ antiporter subunit D -
  J5X95_RS04540 (J5X95_04540) - 888394..888870 (+) 477 WP_007408672.1 Na+/H+ antiporter subunit E -
  J5X95_RS04545 (J5X95_04545) - 888870..889154 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  J5X95_RS04550 (J5X95_04550) mnhG 889138..889512 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  J5X95_RS04555 (J5X95_04555) - 889552..889935 (-) 384 WP_012118312.1 hotdog fold thioesterase -
  J5X95_RS04560 (J5X95_04560) comA 889957..890601 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  J5X95_RS04565 (J5X95_04565) comP 890682..892982 (-) 2301 WP_219371653.1 histidine kinase Regulator
  J5X95_RS04570 (J5X95_04570) comX 892996..893169 (-) 174 WP_012118314.1 competence pheromone ComX -
  J5X95_RS04575 (J5X95_04575) - 893138..893998 (-) 861 WP_157774448.1 polyprenyl synthetase family protein -
  J5X95_RS04580 (J5X95_04580) degQ 894206..894346 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  J5X95_RS04585 (J5X95_04585) - 894809..895150 (+) 342 WP_007408677.1 hypothetical protein -
  J5X95_RS04590 (J5X95_04590) - 895157..896380 (-) 1224 WP_007408678.1 EAL and HDOD domain-containing protein -
  J5X95_RS04595 (J5X95_04595) - 896510..897976 (-) 1467 WP_015418109.1 nicotinate phosphoribosyltransferase -

Sequence


Protein


Download         Length: 766 a.a.        Molecular weight: 88378.61 Da        Isoelectric Point: 7.1786

>NTDB_id=550698 J5X95_RS04565 WP_219371653.1 890682..892982(-) (comP) [Bacillus amyloliquefaciens strain GKT04]
MKLSKNTYSILLILLSLSYIFYLTYINVNNLFVGATANVNNKNQIEITKVSDYTMAYYAGVKKGDIVIKINQNKSVEPKD
LKQNTLKNVRSMTVERSGEIVDLKNLSLLSEDNLFVYLIPVIFFFVCLSCIILILKINKEQDSVSAFILIIFLLTTGIAY
VSAGGSSKGDIISRYVNVITLISVPVNYLLFIYQYIKEFGYKIFNGKVFVALYTVPVINIILEFFRHCFERGVVGKVNLV
SISLLYLIALFFITVGLIKYKKTEQANILKTFLLINIFAFSPFVFLYVAPYIIFNDYYVSSFLVAPFLLLIPFSLVYQFM
TNKIYEIDFIIGRLKYYSLLAVTPTLLIITIYDLVQDPNSEFYTFKLTLLTYIIMLAVFYSKEIFDFRFRLKRFSEKHNY
QDSIFKFTQIIKGASSLKQVFTELESTLLEVLMVSKVCVLEVEGDLNVRYFFNDNEKKLWEPYSHQLAETTSEIGKIVQV
DKGFLMKIGERGTKSYIVLCLSFMNTPKLTWDEISWLKTLSFYTSITMENVLKIEELMNHLEDLKKQETNPVWLKKLMFT
IEEKQRSDLARDLHDSVLQDLISLKRQCELFLADFKKEEPCQLEVQDKLHQMNEQMSDVILMTRETCHELRPQLLYDLGL
VKAVSKLAAQQQERAPFHIRLNTGRFTAALDLDTQLNLYRIIQEFLSNAMKHSQANEVLIMLISIQNKVILHYEDDGVGC
NQEEGGGQSMSMGLSGIKERVRALDGRMKIDTSEGNGFKVDIEMEL

Nucleotide


Download         Length: 2301 bp        

>NTDB_id=550698 J5X95_RS04565 WP_219371653.1 890682..892982(-) (comP) [Bacillus amyloliquefaciens strain GKT04]
ATGAAGTTATCTAAAAATACGTATTCCATTTTATTAATTTTACTCAGCTTGTCTTATATTTTCTATTTAACTTATATAAA
TGTAAATAATTTATTTGTAGGAGCCACCGCAAATGTTAATAACAAGAATCAAATAGAGATTACCAAAGTATCAGATTACA
CAATGGCTTATTATGCTGGTGTTAAAAAAGGTGACATTGTAATTAAAATTAATCAGAATAAGAGCGTTGAACCAAAAGAT
TTAAAACAAAATACATTGAAAAACGTAAGATCTATGACAGTTGAAAGATCTGGTGAAATAGTTGATCTCAAAAATTTAAG
TTTATTAAGTGAAGACAACTTATTTGTTTATTTAATACCTGTTATTTTTTTCTTTGTATGCCTTAGTTGTATTATCCTTA
TTTTAAAAATTAATAAGGAGCAAGATTCAGTTTCAGCTTTTATATTGATCATCTTTTTACTCACTACTGGTATAGCATAT
GTAAGTGCGGGAGGTTCATCAAAAGGAGATATAATAAGCCGATACGTAAATGTCATAACTTTAATATCCGTACCGGTAAA
TTATCTCTTGTTTATTTACCAATATATCAAAGAATTTGGATACAAGATTTTTAACGGGAAAGTTTTTGTTGCTTTATATA
CAGTCCCTGTTATTAATATAATACTAGAGTTTTTTAGGCATTGCTTTGAAAGAGGAGTAGTGGGGAAAGTTAATCTAGTA
TCAATATCTCTCCTTTATTTAATAGCTCTATTTTTCATTACTGTAGGTTTAATAAAGTACAAAAAAACAGAGCAAGCAAA
TATTCTTAAGACTTTTCTTTTAATTAATATTTTTGCTTTCTCACCATTTGTATTTTTGTATGTGGCACCCTACATCATTT
TTAATGACTATTATGTTTCTTCTTTTTTAGTTGCGCCTTTTCTTTTATTAATTCCTTTTTCTTTAGTTTATCAATTTATG
ACTAATAAAATCTATGAAATTGATTTTATTATTGGGCGGTTGAAATATTATAGTCTTTTAGCTGTCACTCCTACTTTACT
TATTATTACAATTTATGATCTTGTACAAGATCCAAACTCAGAGTTTTATACGTTTAAACTAACTTTGCTGACATATATTA
TTATGTTGGCTGTGTTTTATTCAAAAGAGATCTTCGATTTTCGTTTCCGTTTAAAGCGTTTTTCTGAAAAACATAATTAT
CAGGACAGCATATTCAAGTTTACTCAAATAATTAAAGGAGCTTCATCCTTAAAGCAAGTATTCACTGAACTTGAATCTAC
TCTACTTGAAGTTTTGATGGTTAGTAAAGTATGTGTTTTAGAGGTAGAAGGAGACTTAAATGTAAGGTATTTTTTTAATG
ATAATGAGAAAAAATTATGGGAGCCGTATTCTCATCAATTAGCTGAAACGACAAGCGAAATTGGCAAGATAGTTCAGGTG
GATAAAGGGTTTTTAATGAAAATAGGGGAACGGGGCACTAAATCATACATTGTACTGTGTTTATCATTTATGAATACTCC
GAAACTAACTTGGGATGAGATTTCTTGGTTAAAAACCTTATCATTCTACACCAGTATTACGATGGAGAATGTGCTTAAAA
TCGAAGAACTTATGAATCATCTCGAAGATTTAAAGAAACAAGAGACAAACCCGGTCTGGCTCAAAAAGCTGATGTTTACG
ATCGAGGAAAAGCAGCGTTCGGATTTGGCCCGTGATCTGCATGATTCAGTGCTGCAGGACTTGATTTCTTTGAAGCGCCA
GTGTGAGCTGTTTCTGGCCGATTTTAAGAAAGAGGAGCCTTGCCAGTTAGAGGTGCAGGACAAGCTTCATCAGATGAATG
AGCAGATGTCGGATGTCATTTTGATGACCCGGGAGACGTGCCATGAGCTTCGGCCTCAGCTGCTGTATGATTTGGGTCTG
GTCAAGGCGGTATCCAAGCTTGCCGCGCAGCAGCAGGAGCGTGCGCCGTTTCATATCCGTCTGAATACGGGCCGGTTTAC
GGCGGCGCTGGATTTGGATACGCAGCTGAATTTGTACCGCATCATTCAGGAATTTCTTTCGAACGCCATGAAGCATTCAC
AGGCGAATGAGGTGCTGATTATGCTGATCAGCATTCAAAATAAAGTGATTCTGCATTATGAAGACGACGGTGTCGGATGC
AATCAGGAAGAAGGCGGCGGGCAGTCGATGAGCATGGGTCTTTCGGGTATTAAGGAGCGCGTCCGTGCGCTTGACGGACG
GATGAAAATCGACACAAGTGAAGGAAACGGTTTTAAAGTAGATATTGAAATGGAATTGTAA

Domains


Predicted by InterproScan.

(566-635)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Bacillus subtilis subsp. subtilis str. 168

56.34

99.869

0.563